Dickeya lacustris: O1Q98_04365
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Entry
O1Q98_04365 CDS
T08984
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dlc
Dickeya lacustris
Pathway
dlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O1Q98_04365 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlc03019
]
O1Q98_04365 (rne)
03009 Ribosome biogenesis [BR:
dlc03009
]
O1Q98_04365 (rne)
Enzymes [BR:
dlc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O1Q98_04365 (rne)
Messenger RNA biogenesis [BR:
dlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O1Q98_04365 (rne)
Ribosome biogenesis [BR:
dlc03009
]
Prokaryotic type
rRNA processing factors
O1Q98_04365 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WFN56532
LinkDB
All DBs
Position
974177..977425
Genome browser
AA seq
1082 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSHYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPEGMGLIVRTAGVGKSADAL
QWDLAFRLKHWEAIKKAAEGRQAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA
KEHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLS
LSILRLIEEEALKENTREVHAIVPVPIASYLLNEKREAVNAIEKRQGGVKAIIVPHDGMQ
TPHYAVVRVRKGEEKQTLSYMLPQLLEAEAQPSTEEQTAERRTPEQPALVSFAMPDTPPS
ENQPAAVTPSSANQPETTAVTKEKGLFGRVVGMLKGLFGSAEHDKPQAATEETAESGEQQ
QKQERRNNRRQPNRRERNNSNDRPREPRERDEQRRNKRPQPQNAVADSALVEDDSQLNDR
TARDEQRRDQRAERQRRRQEEKRQAQSDVKELNTALTDTEAEEVQAAEQEKPAPVMPRRQ
RRQLTQKVRGQDGESTAVNTVAQPLSEPQSDALLLPPVAQAAVQPVESAEAEGETNNAEN
SRENGLPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLAQASASPEMASGKVWVRYPV
SQPQQQEITPTAAPDALDTPVTEQGIPSVVAQAAVVAPAHADELTQAATAIAESESAAPS
MTEAEASPATQPAPTQQTTQVSTLSEEEHGKDAQANQQADASVATAASGTDAVSIAPVSE
SRSSEEPETSAMAAVDQPETVKAEITSPAPVEVEHQVEQNADRDNTQPAPQTAPTAVVNA
RPHHGSHYASAPMTRAPAPVYVPEAPRVSDWQRPAFAFDGKGSAGGHAAEHHASAPATRP
VL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaggaagagttgcgtgttgctttagttgat
ggtcaacggctgtatgatttggatattgaaagccctggccatgagcagaaaaaggcaaac
atttacaaaggcaaaatcacccgcatagaacccagccttgaagccgcttttgtcgattat
ggcgcagaacggcacggtttcctccccctcaaagaaattgcacgtgaatacttccccagc
cactacaacgctcacggacgtccgaatatcaaggatgtgctgcgcgaagggcaagaagtt
atcgttcaggtggataaagaagagcgcggcaacaaaggcgcggcattaacgacctttatc
agcctggcgggtagttatctggtgctgatgccgaataaccctcgtgctggcggtatctct
cgccgtatcgaaggcgatgaccgtaccgaattgaaagaggcgcttggctcgctggaattg
cctgaaggaatgggtctgattgtacgtaccgccggtgtaggtaaatcagcggacgcactg
caatgggatttagcctttcgtctaaaacactgggaagccatcaaaaaagcggctgaaggt
cgccaggctcccttcctcatccatcaggaaagtaatgtcatcgttcgtgcatttcgcgat
tacttacgccccgatatcggtgaaatcctgatagataaccccaaaattctcgaactggcc
aaagagcatattgctgcgctgggtcgcccggatttcagtagtaaaatcaaactgtatacc
ggtgaaattccgcttttcagtcattatcagattgaatcgcaaatcgaatccgctttccag
cgtgaagtacgtctgccttccggtggttcgattgttattgatagtaccgaagcgttaacg
gcgattgacatcaactccgcccgtgcaacgcgcggcggcgacattgaagaaacggcattt
aacaccaaccttgaagctgccgatgaaattgcgcgtcagttacgtctgcgcgatttgggc
ggattgattgtcatcgacttcatcgatatgacgcccgttcgccaccagcgtgaagttgaa
aaccggcttcgcgatgcggtacgacaagacagagcccgtatccaaataggccggatttca
cgctttggcctactggaaatgtcccgccagcgcctcagcccttcgctgggtgaatccagc
catcacgtttgccctcgttgtaatggtactggcactatccgtgataatgaatcgctgtcg
ctgtctattctgcgcttaattgaagaagaagcgctgaaggaaaatacccgtgaggttcat
gccattgtgcctgtgcctatcgcctcttatctgctcaacgagaagcgagaagccgtcaat
gccattgaaaaacgtcaaggtggcgttaaagcgattatcgtaccgcatgatggtatgcaa
acgccgcattatgccgtagtgcgcgtgcgaaaaggcgaagagaagcagacattaagctac
atgttacctcaactgctggaagcggaagcccagccgtcaacagaggaacaaaccgcagaa
cgtcgcacgcctgaacagcccgcgctggtttcgtttgccatgcctgacacgccgccaagc
gaaaatcaacccgcagcggtgacaccgtcgtcggccaatcaacctgaaaccaccgcggtt
accaaagaaaaaggtctgttcggccgcgtcgttggtatgctgaaagggctttttggttcc
gccgaacacgataaaccgcaggcagcaaccgaagagacggcagaatctggcgaacaacag
cagaagcaagaacgccgcaataaccgtcgccagcctaaccgtcgtgaacgcaataatagc
aacgatcgaccgcgtgaaccgcgtgagcgcgatgagcaacgtcgtaacaagcgcccacag
ccgcaaaatgccgtcgcagattcagcactggtcgaggatgattcccagcttaacgatcgc
accgcgcgtgatgaacaacgccgcgatcagcgtgcagagcgtcaacgtcgccgtcaggaa
gaaaaacgccaggcacagagcgacgtaaaagagctgaacaccgcgctgacggacaccgag
gcagaagaggttcaagccgccgagcaggaaaaacccgcaccggtcatgccacgccgccaa
cgtcgtcagttaacgcagaaagtccgggggcaagacggggaaagtacggcggttaacacc
gttgcacaaccgttatccgagcctcagtctgatgctcttctgctgccacctgtcgcacag
gccgccgtacaaccagtggaaagtgccgaggcagagggcgagaccaacaacgctgaaaac
agccgtgaaaacggtttgccgcgtcgttcgcgtcgctcgccgcgccacctgcgtgtgagt
ggtcagcgccgtcgtcgctatcgtgatgagcgttacccggcccaatcgccgatgccatta
gcgcaagcgtcggcttcgcctgaaatggcatccggtaaagtatgggttcgttatccggta
agtcagcctcagcaacaggaaataacgccaactgcggcacctgacgcgttggatacgccg
gtcacagaacagggaataccgtctgtagtcgcgcaagcagccgtcgtcgcgcccgcacat
gcagatgaactgacccaggcagcaacagccatcgctgaaagcgaatcagccgcgccgtca
atgactgaggccgaagcatcaccggccacacagccagcgccgactcagcagaccacgcag
gtcagtaccctatctgaagaggagcacggcaaagatgcgcaggccaaccagcaagcggat
gcctccgttgccacagcagcctctggcactgatgctgtttcgatagcaccggtaagcgag
agtcgttcgtcagaggaacccgagacatcggctatggctgctgttgatcaacctgagaca
gtaaaagcggagataacatcgcctgcccctgttgaggtggaacaccaggtggaacagaac
gctgatcgcgacaacacacaaccggctccccagacagcgccaacggcggtggttaatgcg
cgtccgcaccatggttcgcattatgccagcgcgccaatgactcgggcacccgcaccggtt
tacgtacccgaagcacctcgtgtaagtgactggcagcgaccggcatttgcgtttgatggc
aaaggttctgccggcggacacgctgcggaacaccacgccagcgctcctgcaacacgccct
gtgttgtaa
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