Dickeya lacustris: O1Q98_08415
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Entry
O1Q98_08415 CDS
T08984
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dlc
Dickeya lacustris
Pathway
dlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O1Q98_08415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlc03019
]
O1Q98_08415
03009 Ribosome biogenesis [BR:
dlc03009
]
O1Q98_08415
Enzymes [BR:
dlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O1Q98_08415
Messenger RNA biogenesis [BR:
dlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O1Q98_08415
Ribosome biogenesis [BR:
dlc03009
]
Prokaryotic type
rRNA helicases
O1Q98_08415
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
WFN57209
UniProt:
A0ABY8GBH2
LinkDB
All DBs
Position
complement(1865163..1867064)
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AA seq
633 aa
AA seq
DB search
MAEFETSFASLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKADLKAPQMLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDQYRALLAKLQPSDELDVET
LAAALLKMAQGERPLILPPDAPARPRREFRERDDRFERRGERNDRGDRNDRGPRGERGDE
RPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGELLSHFTRTRILNKPMNMQLLGDAQPHERRERREGGERGERSERGGRNFGERAG
NGRRPFSGERREGGGERRGNRDGQRAPRRFNDA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctagcttggggctgtctgctcctattttgaatgca
ctgtctgacatggggtatgaaaaaccgtccccgattcaggcggaatgtattccccattta
ttgaatggccgtgatgtgctgggtatggcccagacaggtagcggcaaaacagcggcgttt
tctctgccgttgttgaataacatcaaggctgacctgaaagcaccgcaaatgctggtgctg
gcaccgacccgtgaactggcggtgcaggttgctgaagcctgtaacgaattctccaagcac
atgcagggtgttaacgtggtggctttatatggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgttgtcggtacgccgggccgtctgctggatcacctg
aaacgcggtacgctggatctctctaacctgagtggtctggtactggatgaagccgacgaa
atgttgcgtatgggctttattgaagatgtggaaaacatcatggcgcagatcccggctgaa
catcagaccgcgttgttctctgcgaccatgccggaagcgattcgccgcatcacgcgtcgt
ttcatgaacgatccgcaggaagtgcgtattcagtctagcgtgaccacgcgcccggatatc
agccagagctactggacggtatacggtatgcgtaagaacgaagcgctgatccgtttcctg
gaagcggaagattttgatgcagcgatcatcttcgtgcggactaaaaacgccacgctggaa
gtggccgaagcgctggagcgcagcggttataacagcgccgcgctgaacggtgacatgaac
caggcgctgcgtgagcagacgctggaacgcctgaaggatggccgtctggatatcctgatc
gcaaccgacgttgccgctcgtggtctggatgttgagcgtatcagcctggtggtgaactac
gacatcccgatggatgcagaatcctatgtacaccgtatcggccgtactggtcgtgcgggt
cgtgctggccgtgcgttgctgtttgtggaaaaccgtgaacgtcgcctgttgcgcaacgtt
gagcgcaccatgaagctgaccatcccggaagtggaactgccgaatgccgagctgttaggt
cagcgccgtctggcgaagtttgccgcgaaggtacagcagcaactggaaagcagcgatctg
gatcaataccgtgcgctgctggcgaaattgcagccgtcggatgagctggatgtcgaaacg
ctggctgctgcactgctgaagatggcacagggcgaacgtccgttgatcctgccgccggat
gcgccggcacgtccgcgtcgtgaattccgtgagcgtgacgatcgcttcgagcgtcgtggc
gagcgtaatgaccgtggcgatcgcaacgatcgtggcccgcgcggtgagcgtggcgacgag
cgtccggcacgtcgcgagcgtcgtgatgtgggcgagatggagctgtatcgcattgaagta
ggccgtgatgacggtgttgaagtgcgccacatcgtcggtgcgattgccaatgaaggggat
atcagcagccgttacatcggtaacatcaagctgtttgcgtcccactcgaccatcgagctg
ccaaaaggcatgccgggtgaattgctgtcgcatttcacgcgtacccgcattctgaacaag
ccgatgaacatgcaactgctgggcgatgcacagccgcatgagcgtcgcgagcgtcgtgaa
ggtggtgagcgtggcgaacgcagtgaacgcggtggccgtaactttggcgaacgcgctggc
aatggccgtcgcccgtttagcggcgagcgtcgcgaaggcggtggtgagcgtcgtggtaat
cgtgacgggcagcgtgcgccgcgccgttttaacgatgcctga
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