Dickeya lacustris: O1Q98_08575
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Entry
O1Q98_08575 CDS
T08984
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dlc
Dickeya lacustris
Pathway
dlc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O1Q98_08575 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlc03021
]
O1Q98_08575 (rpoD)
Transcription machinery [BR:
dlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O1Q98_08575 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
DUF2610
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
WFN57234
UniProt:
A0ABY8GBM9
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Position
1897737..1899578
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITAFVDPNAEEDLAPNAAP
ESTEMADEDIDDDDEDENEESDSDDTDDDNSIDPELARQKFTELRDQYEATRLSIKAHGR
SHASAIEEINKLSEVFKQFRLVPKQFDLLVNNMRSMMDRVRAQERQIMKLCVEQCKMPKK
NFVTLFTGNETNSKWFEAALSLNKPWCEKLREVEEDVLRSLQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagctacttgtcacccgtggtaaggagcaaggc
tacctgacctatgccgaggtcaatgaccatctgccggaagatatcatcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gatgccgatgatctgatgctggccgagaatactgccgacgaagatgccgccgaggcagcc
gcgcaggtattgtcgagcgttgaatccgagattggacggacaaccgacccggtgcgtatg
tacatgcgcgaaatgggtacggtcgagctgctgactcgtgaaggcgaaatcgatatcgcc
aaacgcattgaggacggtatcaatcaggtacagtgctctgtagccgaatacccggaagct
atcacctatttactggaacagtacgatcgcgttgaggccggtgaaagccgcctgtctgat
ctgataaccgcgtttgtcgatccgaacgccgaagaggatttggcaccaaacgccgcgcca
gaaagcacagaaatggccgacgaagacatcgatgacgacgatgaagatgaaaacgaagaa
agcgacagcgacgataccgatgacgataacagcatcgacccggagctggcccgtcagaaa
ttcaccgaactgcgcgaccagtacgaagcgacccgtctgagcatcaaagcccatggccgc
agccatgcaagcgcgattgaagagatcaacaaactgtctgaagtgttcaaacagttccgt
ctggtgccaaaacagtttgatctgctggtcaataacatgcgttccatgatggatcgcgtc
agggcgcaagaacgccagatcatgaaactgtgtgttgaacagtgcaagatgccgaagaaa
aacttcgtcaccctgtttactggcaacgaaactaacagcaaatggttcgaagccgcgctg
tcactgaacaaaccctggtgtgaaaaactgcgcgaagttgaagaagacgtgctgcgcagc
ctgcaaaaattacagcaaattgaagaagaaaccggcctgaccatcgagcaggtaaaagac
atcaaccgccgtatgtcgattggcgaagccaaagcgcgtcgcgccaagaaagagatggtt
gaagcgaacctgcgtctggttatctcaattgcgaaaaaatacaccaaccgtggcctgcaa
tttctggatctgattcaggagggcaacatcggcctgatgaaagcggtagacaaattcgaa
taccgccgtggctataagttctccacctacgccacctggtggatccgtcaggcgatcacc
cgttctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatc
aacaaactcaaccgtatttctcgccagatgttgcaggaaatgggccgcgagccgacgccg
gaagaactggctgaacgcatgctgatgccggaagataagatccgtaaagtcctgaagatc
gccaaagagcctatctcgatggaaacgccgatcggtgatgatgaagattcacatctgggc
gatttcatcgaagacaccacgctggagctgccgctggattccgctacctcggaaagcctg
cgttctgccacccacgacgtactggcgggcctgaccgcacgtgaagccaaagtgctgcgc
atgcgttttggtatcgacatgaataccgaccacacgctggaagaagtcggcaaacagttc
gacgtcacccgcgaacgtattcgtcagatagaagccaaagcgttgcgtaaattgcgccac
ccaagccgttctgaagtgctgcgcagtttcctggacgactaa
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