Dickeya lacustris: O1Q98_10020
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Entry
O1Q98_10020 CDS
T08984
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
dlc
Dickeya lacustris
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlc03019
]
O1Q98_10020 (csrD)
Messenger RNA biogenesis [BR:
dlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
O1Q98_10020 (csrD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
WFN54066
LinkDB
All DBs
Position
complement(2206000..2207964)
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AA seq
654 aa
AA seq
DB search
MGLTARLSILITLLTALAVLLMLVSSIFSFVCYSQQRMEHQLRAVAAGIDQALLVQPPDS
IQFWLPAVMKAASIVELEIRDSHERLYLLRQPDLLRQSDLFVDGNDSALVYRHAELSLLH
HTDVKVNVTYGDPLFGSPRYLKPALTVVLAILLIAILVFHAVRWLRRQMAGQVQLETRAR
RILAGERETVMYGSVHEWPAAASGALDQLLLDLVEAREARSRVDTLIRSFAAQDSQTGLN
NRLFFENQLATQLEDPEEVGTHGVVMMIRLPDFDTLQETHGYGGVVEEYRNTLINLLSTF
VLRYPSALLARYYHSDFTVLLPHCTLKEADSIASQLVKAIDILPSTPLIDREDILHIGIC
AYHGGQSTEQVMESVEDATRNAVLQGGNGWCVYDRRGPEKGRGSVKWRTLLEHTLLRGGP
RLYQKPAITRSGEVHHREMFSRIYDGSQELLEAEYMPLVRQLGLTAGYDRQLINRVIALT
VSWQDSVLAFPITVDSLLQRSFLRWLRETLLQCPKRQRERLLFELAESEVCQYIGRLRPI
LAMITGLGCRLAVTQAGLTLVSTAYIKSLRVEVIKLHPGLVRSLDKRPENQLFVSSLTEA
CKGTHAHVFASGVRTQEEWQTLIEKGVCGGQGDLFAASEPVSNTLKKYSPRTYV
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggggttaacagccagactatcaatactcatcacgttgctgacggcattggcggtgttg
ctgatgctggtgagcagcatttttagttttgtatgttatagccagcaacggatggaacat
caactcagagccgtggcagccggtattgatcaggctttattggtgcaaccgccggattca
atccagttttggctgcctgcggtcatgaaagccgcgagcattgtggaactggaaatccgt
gacagccacgaacgcctctatttattacgccaaccggatctgttgcgccagtccgatctt
ttcgttgatggcaatgacagtgcgctggtgtatcgccatgcggagctgtcgctgttacac
cataccgatgtcaaggtgaatgtgacctatggcgatccgctattcggctcgccgcgctac
ctgaaacccgcgctcaccgtggtgctggctatcttgttgatagccattttggttttccat
gcggtgcgctggttacggcgtcaaatggccgggcaagtacagctggagacacgcgcgcgg
cgtattctggccggtgaacgtgaaacggtgatgtatggttcggtgcatgagtggcctgct
gcggccagcggcgcgctggatcaactgctgttggatctggtggaggctcgtgaggcccgc
agccgtgtcgataccttgattcgttcatttgctgcgcaagattcacaaaccggccttaac
aatcgactcttttttgaaaatcaactcgccacgcaactcgaagacccggaagaagtgggg
acgcatggtgtggtgatgatgataaggttgcccgattttgacacgctacaggaaactcac
ggctatggtggggtggttgaagagtatcgcaatacgcttatcaatctgctctcaaccttt
gtattacgttacccgtctgcattgctggcccgttattatcacagtgatttcaccgtcttg
ttgccccactgcaccctgaaagaagccgatagcatcgccagccaactggtgaaagcgatt
gatattttaccttcgacgcccttgattgaccgcgaagatattctccacattggcatatgc
gcttatcacggtggccaaagcaccgaacaggtgatggaaagcgtggaagatgccacccga
aatgcggtgttgcaaggcggcaatggctggtgtgtctatgatagacgcgggccggagaaa
ggccgggggagcgtgaagtggcgtacattgcttgagcatacgctgttgcgcggcgggccg
cgtttgtatcagaaaccggcgattacccgcagtggcgaggtgcatcatcgtgaaatgttt
agccgtatttatgatggctctcaagaattgctggaagccgaatacatgccgctggtgcgg
caactgggtctgacggcgggctatgataggcagttgattaaccgggtgattgcactgacg
gtcagttggcaggattcggtgttggcttttcctatcacggtcgattcattattacagcgc
tctttcttacgctggttgcgcgaaacgctgctgcaatgcccgaaaaggcagcgggagcgg
ttactgttcgagttagccgagtctgaggtgtgccagtatattggccgcctgcgcccgatt
ctggccatgataactgggcttggctgccgtttggcggtgactcaggcgggcctgacgctg
gtcagcacggcctatatcaagtcgctgcgggtcgaggtcatcaagctgcaccccggactg
gttcggagcctggataagcggccagagaatcagttgttcgtcagtagcctgactgaagcg
tgcaaaggcacgcatgcgcatgtgtttgcctcgggcgtgcgtactcaggaagagtggcag
acattaatcgagaaaggcgtttgcggcgggcagggtgatttgtttgccgcatcggaaccg
gtgagtaacacgttgaaaaaatattcaccgcgaacctatgtttga
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