Dickeya lacustris: O1Q98_10290
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Entry
O1Q98_10290 CDS
T08984
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dlc
Dickeya lacustris
Pathway
dlc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O1Q98_10290 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlc03021
]
O1Q98_10290 (rpoC)
03400 DNA repair and recombination proteins [BR:
dlc03400
]
O1Q98_10290 (rpoC)
Enzymes [BR:
dlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O1Q98_10290 (rpoC)
Transcription machinery [BR:
dlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O1Q98_10290 (rpoC)
DNA repair and recombination proteins [BR:
dlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O1Q98_10290 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
LPD39
Motif
Other DBs
NCBI-ProteinID:
WFN54108
LinkDB
All DBs
Position
complement(2265024..2269247)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKGMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHEKNAQGEWAAKTSLIDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRKGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLRL
GNAKFVMNNAGKFVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGNGDDVAGGETVANW
DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGAQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLEADGKISATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEVQS
APQVSAEEASANLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgattcgttcgtggtcttttggtgaagtgaagaag
ccagaaaccattaactaccgtacgttcaaaccagaacgtgacggcctgttctgcgcccgt
atttttgggccggtaaaagattatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggcgtgatttgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgaccgcccacatctggtttttgaaatccctg
ccgtcgcgtatcggcctgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcttacgtggtggttgaaggtggcatgaccaacctggaacgccgccaaatcctg
accgaagagcagtatctggacgcactggaagagttcggtgacgaattcgacgccaaaatg
ggcgccgaagctatccaggcgttgctgaaagggatggatctggagcaggaatgcgaacaa
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgc
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgccggtgctgccgccggacttgcgtccgctggtgccgctggacggcggccgtttc
gcgacctccgatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtttgaaa
cgtctgctggatctggcggctcccgacatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggtcgatgcgctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgttatcaccgtaggcccgtac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggccttgcgaccaccatcaaagcggccaagaagatg
gtagaacgcgaagaagcggtggtgtgggatattctggatgaagttatccgcgaacacccg
gtactgctgaaccgtgcgccgacgctgcaccgtctgggtattcaggcgtttgagccggtt
ttgatcgaaggtaaagcgattcagttgcacccgctggtgtgtgcggcctataacgccgac
ttcgacggcgaccagatggctgttcacgtaccattgacgctggaagcccagcttgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgagcctatcatc
gttccgtctcaggacgtggtgttgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaccgggccgaaagaagccgagcgtatttatcgtgcgggt
ctggcgtcactgcacgcgcgcgtcaaagtgcgtattaccgagcacgagaaaaatgcacag
ggtgagtgggcggcgaaaaccagcctgatcgacaccactgttggtcgtgccattctgtgg
atgatcgtgccgaaaggcctgccttactccatcgtcaaccaggcgctgggtaagaaagcg
atctccaagatgctgaacacctgctatcgcgtgttgggtctgaagccgacggttattttt
gccgaccagatcatgtacaccggttttgcttacgcggcgcgctctggttcttctgtcggt
atcgacgacatggtgatcccggcgaaaaaagtggaaatcatcaccgaagccgaagccgaa
gttgccgagattcaggagcagttccagtctggtctggtgacagcgggcgagcgttataac
aaagtcatcgacatttgggctgcggcgaatgagcgcgtggccaaagcgatgatggaaaac
ctctcgaccgaaaccgttatcaaccgtaaaggtgaagaagagagacaagtgtccttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcggggatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggacttggttgtcaccgaggacgattgcggcacccacgaaggcatc
atgatgacgccggttatcgaaggcggcgacgtcaaagagccgctgcgtgagcgcgtactg
ggtcgtgtaacggctgaagacgtgctgaaaccgggtacggctgacattctggttccgcgc
aacacgctgctgaacgagaaatggtgtgacctgttagaagaaaactcggttgatgccgtg
aaagtgcgctccgtagtagggtgtgaaaccgacttcggcgtgtgcgccaagtgctacggt
cgtgacctggcgcgtggtcatatcatcaacaaaggtgaggccatcggggttatcgcggca
cagtccatcggtgaaccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcggctgagtccagcattcaggtgaaaaacaagggtacgttacgactg
ggcaatgccaagttcgttatgaacaatgccggtaagtttgtcatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggccgtaccaaagaaagctataaagtgccttacggt
gcggtgatggcgaaaggtaacggtgacgatgtcgcgggcggtgaaaccgtcgcgaactgg
gacccgcataccatgccggttatcaccgaagtgggcggtagcattcgctttaccgacatg
attgacggccagaccattacgcgtcagaccgacgaactgaccggcctgtcttccatcgtg
gttctggacagtgcagaacgtaccggtggcggtaaagacttgcgtccggcgctgaaaatc
gttgacgccaacggcaatgacgtactgattccgggcaccgacatgccggcacaatacttc
ctgccgggtaaagcgattgttcagctggaagacggtgcgcagatcggtgcgggtgatacg
ctggcgcgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggatctgttcgaagcccgtcgtccgaaagagcctgctatcctggctgaaatcagc
ggcgtggtatcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatcacgccggtt
gatggcagcgatccgtacgaagagatgatcccgaaatggcgtcagcttaacgtgttcgaa
ggcgaacgtgtggaacgcggtgacgtgatttccgacggcccagaatctccgcatgacatt
ctgcgcctgcgtggtgttcacgcggtgacgcgttacatcaccaacgaagtgcaggaagtt
taccgcttgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttaacccaggcagctctgagttcctggaaggtgagcaggtc
gagatgtcacgcatcaagatagcgaaccgtcagttggaagcagacggcaagatctcggca
acttacagccgcgacctgctgggtatcaccaaagcgtcgctggctaccgaatccttcatc
tctgcggcatcgttccaggaaacgacgcgcgtgttgacggaagcagccgttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgtcatcgtcggtcgtctgattccggccggt
acgggttatgcgtatcatcaggatcgcatgcgtcgccgtcaggcgggcgaagtgcagtca
gctcctcaggtgagcgcagaggaagcctctgctaacctggccgagttgctgaatgccggt
ctgggtggtagcgacgacgagtaa
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