Dickeya lacustris: O1Q98_10295
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Entry
O1Q98_10295 CDS
T08984
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dlc
Dickeya lacustris
Pathway
dlc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O1Q98_10295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlc03021
]
O1Q98_10295 (rpoB)
03400 DNA repair and recombination proteins [BR:
dlc03400
]
O1Q98_10295 (rpoB)
Enzymes [BR:
dlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O1Q98_10295 (rpoB)
Transcription machinery [BR:
dlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O1Q98_10295 (rpoB)
DNA repair and recombination proteins [BR:
dlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O1Q98_10295 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WFN54109
UniProt:
A0ABY8G134
LinkDB
All DBs
Position
complement(2269354..2273382)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIS
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKVVYEIHNNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDSVERIEVPVEYIAGKVLAKD
YVDESTGEVIAMANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEIHYLSAIEEGNYVIAQANTNLDDEGHFIDELVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEAEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHDVLVAGGVEAEKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQHQEVAK
LREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKENEIKELLK
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gtgttggatataccttatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggtcagtatggtctggaagcagcattccgttccgtattccctatctca
agttacagcggcaattccgaattgcagtatgtgagctaccgtctgggtgagccagtattt
gacgttaaagagtgtcaaattcgtggcgtcaccttctctgctccgctgcgcgtgaagctg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtgtacatgggcgaaattccgctcatgaccgataacggtacctttgttatcaacggt
actgagcgtgtcatcgtttctcagttgcaccgtagcccgggcgtgttcttcgatagcgat
aaaggtaaaacccactcttctggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggttggatttcgagtttgacccgaaagataacctgtttgtccgtatcgaccgc
cgtcgcaagctgcctgctaccatcattctgcgcgcgctgaattacaccactgagcagatt
cttgatctgttcttcgataaagtggtgtatgagattcacaacaacaaattgcagatggag
ctggtgcctgagcgcctgcgtggtgaaaccgcctctttcgatatcgaagcgaacggtaaa
gtctacgttgagaaaggccgccgcatcacggcgcgtcatattcgtcagctggaaaaagac
agcgttgagcgcattgaagtacctgtagagtacatcgcaggtaaagtgctggcgaaagat
tacgttgatgaaagcaccggcgaagtgatcgcgatggccaatatggagctgtcgttggat
ctgctggctaaactgagtcagtctggccacaaacgtatcgaaacgctgtttaccaacgat
ctggatcacggcccgtacatgtccgagaccgtgcgtgttgacccaaccaacgatcgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggcgagccgccgacacgcgaagcc
gctgaaaccctgttcgaaaacctgttcttctctgaagatcgctatgacctgtctgcggtt
ggccgcatgaagttcaaccgttctttgctgcgtgaggaaatcgaaggttccggtatcctg
agcaaagaagacattatcgatgtgatgaaaaaactcatcgatattcgtaacggtaaaggc
gaagtcgatgatatcgaccacctgggcaaccgtcgtatccgctctgtgggcgagatggcg
gaaaaccagttccgcgtcggtctggtgcgtgttgagcgtgcggtgaaagagcgtctgtcg
ctgggcgatctggatacgctgatgccgcaggacatgatcaacgctaaaccgatttccgct
gcggtgaaagagttcttcggttccagtcagctgtctcagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgccgtatctccgcattgggcccaggcggtttgacccgt
gagcgcgctggctttgaagtgcgagacgttcacccgactcactatggccgtgtttgtcct
atcgaaacgccggaaggcccgaacatcggtctgattaactcgctgtccgtgtacgcacag
accaacgagtacggtttcctggagaccccgtatcgccgtgtgcgcgatggcgtggtgacg
gacgaaattcattacctgtcggcgattgaagaaggcaactacgttattgctcaggcgaac
accaacctggatgacgaaggccacttcattgacgaactggtgacttgccgtagcaagggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtttccacccagcaggtg
gtttccgttggtgcgtccctgatcccgttccttgagcacgatgacgccaaccgcgccttg
atgggtgcgaacatgcaacgtcaggctgtaccaacactgcgtgcggataagccgctggtg
ggtaccggtatggagcgcgcggttgccgttgactccggtgtaaccgcagttgctaaacgc
ggcggtaccgtgcagtacgttgatgcctctcgtatcgttatcaaagttaacgaagccgag
atgtatccgggcgaagccggtatcgacatttacaacctgaccaagtacacccgttccaac
cagaacacctgcatcaaccagatgccgtgtgtgtcgctgggtgaaccggttgagcgcggt
gatgtactggctgatggcccgtctaccgatctcggtgaactggcgctgggccagaacatg
cgcgtggcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtttctgag
cgtgtggttcaggaagaccgttttactaccatccacattcaggaactggcgtgcgtgtcc
cgtgacaccaagctggggccggaagagattactgctgacatcccgaacgtgggtgaagcg
gcgctctccaaactggatgaatccggtatcgtttacatcggtgcggaagtgaccggtggc
gacattctggtcggtaaagtgacgccgaaaggcgaaacgcagctgacaccggaagagaaa
ctgctgcgcgctatcttcggtgagaaagcgtctgatgtgaaagactcttctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaagcaggccaagaaagacctg
accgaagagttgcagattctggaagccggtctgtttgcccgtattcacgacgtgctggtt
gccggtggcgttgaagccgagaaactggacaagctgccgcgcgagcgttggctggaactg
ggtctgactgacgaagacaaacagaatcagctggaacagttggccgagcagtacgacgaa
ctcaaacatgagttcgagaagaaactcgaagccaaacgtcgcaaaatcactcagggcgat
gacctggcaccgggcgtgctgaagatcgtcaaagtgtatctggcggttaaacgtcagatc
cagccgggtgacaagatggcgggccgtcacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgacgagaacggcacaccggttgatatcgtactgaacccg
ctgggcgtaccgtcacgtatgaacatcggtcagatcctggaaacccatctgggcatggca
gcgaaaggcatcggcgacaagatcaacgccatgctcaagcagcatcaggaagtggctaaa
ctgcgtgagtttatccagcgcgcttacgatctgggcaacgacgtgcgccagaaagttgac
ctgaacaccttcagcgatgaagaagtgctgcgtctggctgagaacctgaaaaaaggtatg
ccgatcgccacgccggtgttcgacggtgccaaggaaaacgagatcaaagagttgctgaaa
ctcggcgatctgccgacttcgggccagatcacgctgtttgatggccgtaccggtgagcag
ttcgagcgtccggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcacgttcgacgggctcttacagtctggttacgcagcagccgctgggt
ggtaaagcacagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagct
tacggtgccgcttacaccttgcaggaaatgttgacggtgaaatccgatgacgtgaatggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgcatggaacctgggatgccg
gagtccttcaacgtattgttgaaagaaatccgctctctgggtatcaacatcgagctggaa
gaagagtaa
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