Dickeya lacustris: O1Q98_17725
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Entry
O1Q98_17725 CDS
T08984
Symbol
mrdA
Name
(GenBank) peptidoglycan DD-transpeptidase MrdA
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
dlc
Dickeya lacustris
Pathway
dlc00550
Peptidoglycan biosynthesis
dlc01100
Metabolic pathways
dlc01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
O1Q98_17725 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
O1Q98_17725 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
dlc01011
]
O1Q98_17725 (mrdA)
Enzymes [BR:
dlc01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
O1Q98_17725 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
dlc01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
O1Q98_17725 (mrdA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
WFN55418
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All DBs
Position
complement(3923315..3925219)
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AA seq
634 aa
AA seq
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MNIERKPFRDYTAEASLFVRRALVAFLVILLLSGILVFNLYHLQVLRFDDYRTRSNENRI
KLVPIAPSRGIIYDRNGTPLALNRTIYQLELIPEKVSNLEETLQTLKPIVDLSDEDIENF
RKERKRSRRFTSIAVKTALSEVQVASFAVNQYRFPGVEVKGYQRRYYPYGSALTHVIGYV
SKINDKDLDRLDKEGNLADYAATHDIGKLGIERYYEDVLHGKPGYEEVEVNNRGRVIRQL
HEQPPQAGKDIYLTLDLSLQLYIEKLLAGSRAAVIVTDPRDAGILAMVSTPSYDPNPFVD
GISGKAYRSLLNDPNRPLINRATQGAYPPASTVKPYIAVSALSSGVITPYTSLFDPGWWQ
LPGSEKRFRDWKKWGHGRLNLTKSLEESADTFFYQVAYDMGIDRLSEWMTKFGYGRLTGI
DLLEERAGIMPTREWKMKHYKKPWYQGDTIPVGIGQGYWTATPVQMMKALTTLINDGQVK
TPHLLNSTLENNTQVPYRQPDHQQIGDIRSGYWEIVKDGMYGVANRQNGTAHKFFADSSY
KIAAKSGTAQVFGLKENETYNANRIAERLRDHKLMVAFAPYNNPKVAMSIILENGGAGPA
VGTIVRQILDHIILGDNNTSLPDAPPSPPGSETE
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaacatagagcgtaaaccctttcgtgactacaccgccgaagcgtccctgtttgtacgc
cgggcgctggtggcatttttggtcattttactgttaagtggcattttggtttttaacctt
taccacttgcaggttttacgttttgacgactatcgcacccgttctaatgaaaaccgcatt
aaactggtgccgattgctcctagccgtgggattatttatgaccgcaacggcacgccatta
gcgctgaatcgcaccatctatcagttagagttaattcctgagaaagtcagcaatctggaa
gaaacgctacagaccctcaaaccgattgttgatttgagcgatgaagatatcgaaaacttc
cgcaaggagcgcaaacgctcgcggcggtttacctcaatcgctgtcaaaacagccctgagc
gaggttcaggtagccagttttgccgttaatcaataccgctttcccggtgttgaggtgaaa
ggttatcagcgccgctactatccttacggttccgcactgacacacgttatcggttatgtc
tccaaaatcaacgataaagatctggacaggctagataaagaaggcaatctcgcggattat
gccgccacccatgacatcggcaaactcggtattgagcgttattacgaagacgtgctgcac
ggtaaaccgggttatgaagaggtggaggtcaataaccgtggccgggtgattcgccagctg
catgaacagccgccacaagcaggtaaagatatttacctgacgttggatctcagcctgcaa
ctctatattgaaaaattgctggcgggcagccgggcggcagtgattgtcaccgaccctcgc
gatgcggggatactggcgatggtgtccacccccagctatgacccgaacccgtttgttgac
ggcatttccggcaaagcttaccgctcgctattaaatgatccgaacaggccgctcatcaat
cgcgcgacacagggcgcttatccgccagcgtccaccgtcaaaccttatattgcggtatcg
gctctaagctctggcgtgataaccccttacacgtccctgttcgaccccggctggtggcaa
ctacccggctcggaaaaacgcttccgtgactggaaaaaatggggtcatggccgcctgaat
ttaaccaaatcccttgaggaatccgctgatacctttttctatcaagtggcgtatgacatg
ggcattgaccgtctctctgaatggatgacgaaattcggctatggccgattgacgggtatc
gatctgctggaagaacgtgccggtatcatgccaacccgcgagtggaaaatgaagcactac
aaaaaaccgtggtatcaaggggatactatccctgttggtatcggtcaggggtattggaca
gcgacgccggttcagatgatgaaagcgctgaccaccctgattaacgacggtcaggtgaag
acgccgcacctgcttaacagcacgctggagaacaatactcaggtgccctatcgtcaaccc
gatcaccagcaaatcggcgatattcgctcaggctattgggaaattgtcaaagacggcatg
tacggcgttgccaatcgccagaacggtacggcgcataagttttttgctgattcctcttac
aagattgccgccaaatcggggacagcacaggtctttgggctcaaggaaaacgagacctat
aacgccaatcgcattgccgaaaggctgcgcgaccataaattaatggttgcctttgccccg
tataacaatcctaaagtcgccatgtcgattattttggaaaacggcggggcgggcccggcg
gttgggacaattgtacgtcagatcctcgaccatattattcttggcgacaacaataccagc
ctaccggatgcaccaccatcgcctccgggcagtgaaaccgagtaa
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