Candidatus Dehalogenimonas loeffleri: V8247_02990
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Entry
V8247_02990 CDS
T10610
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dlf Candidatus Dehalogenimonas loeffleri
Pathway
dlf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8247_02990 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlf03021
]
V8247_02990 (rho)
03019 Messenger RNA biogenesis [BR:
dlf03019
]
V8247_02990 (rho)
Transcription machinery [BR:
dlf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V8247_02990 (rho)
Messenger RNA biogenesis [BR:
dlf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V8247_02990 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA_22
AAA
OB_RNB
NACHT
Mor
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
WWX25948
UniProt:
A0ABZ2J6P1
LinkDB
All DBs
Position
complement(590495..591835)
Genome browser
AA seq
446 aa
AA seq
DB search
MTEQDPNLNNFENEAPLPPEPPPPPLSLSRLETMSREDLLELAKRMKVTGMTGAKKQDII
LRLLQATTEQQGNIFCSGILEIMPDGYGFLRQGTLLPSSSDIYVSQSQIRRFGLRTGDMI
IGQSRQAKPGEKYYSLLRVEAINDFNPEGAKRRPYFGSLTPTFPDRLLNLETDANILSTR
LINLVAPIGRGQRGMVVSPPKAGKTMLMKNIANAVGSNYNDIHLMVVLIGERPEEVTDMR
RSIKGEVMAATFDEAVENQTRVAELALERAKRMVESGKDVVILLDGITRLTRAYNLAMPP
SGRTLSGGLDPVALHPAKKFFGAARNTAEGGSLTIIATCLVETGSRMDDLIYEEFKGTGN
MELHLDRRLAERRVFPAIDIPRSGTRREELLHPDAAYRQIQLLRRMVGIIADDSNNFAEV
TERVLDKLKKSKNNVDFLTNLTREKA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaagatcccaatctgaacaactttgaaaatgaagcgcccctcccccccgaa
ccgccgccgccgccgttgtcgctgtcgcggctggagacgatgagccgtgaggacctgctg
gagctggccaagcgcatgaaggtgaccggcatgaccggtgccaagaagcaggacatcatc
ctgcggctgctccaggccacgacggagcagcagggcaatatcttctgctccggcatcctg
gaaatcatgccggacggctacggtttcctgcggcaggggacgctgctgccctcgtcatcg
gatatttacgtctcccaatcacaaatccgccgcttcggcctgcgcaccggcgacatgatt
atcggccagtcccgccaggccaagcccggtgagaaatactactcgctgctgcgcgttgag
gccatcaatgatttcaatccggaaggcgccaagcgccgcccgtacttcggctcactgacg
cccaccttccccgaccggctgctgaacctggaaaccgatgccaatatcctgtccacccgc
ctgattaatctggtggcccccatcggtcgcggccagcgcggcatggtggtttcaccgccc
aaggccggtaagacgatgctgatgaagaacatcgccaacgccgtcggctccaattacaac
gatattcacctgatggtggtgctcatcggcgaacgcccggaagaggtcaccgacatgcgc
cgctccatcaagggcgaggttatggccgccacctttgacgaagcggtggagaaccagacc
cgcgtggcggaactggcgctggagcgcgccaaacgcatggtggaaagcggtaaggatgtg
gttatcctgctggacggcattacccgcctgacccgcgcctataacctggccatgcccccg
tccggccgcaccctgtccggcggtctggacccggtcgctctgcacccggccaagaagttc
ttcggcgcggcgcgcaacaccgctgaaggcggctctttgaccattatcgccacctgcctg
gtggaaaccggctcccgcatggatgacctgatttacgaagagttcaagggcaccggcaat
atggaactgcacctggatcgccggctggcggaacgccgcgtcttcccggccattgatatt
ccccgctccggcacccggcgcgaggaactgctgcatcctgacgccgcttaccggcagatt
cagctcctgcgccgcatggtgggcatcatcgccgatgactccaacaacttcgccgaggtc
accgagcgtgtgctggataagctcaagaagagtaagaataacgtggatttcctgaccaat
ctgacgcgggagaaggcgtag
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