Candidatus Dehalogenimonas loeffleri: V8247_07345
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Entry
V8247_07345 CDS
T10610
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dlf Candidatus Dehalogenimonas loeffleri
Pathway
dlf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8247_07345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlf03019
]
V8247_07345
03016 Transfer RNA biogenesis [BR:
dlf03016
]
V8247_07345
Enzymes [BR:
dlf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V8247_07345
Messenger RNA biogenesis [BR:
dlf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V8247_07345
Transfer RNA biogenesis [BR:
dlf03016
]
Prokaryotic type
tRNA degradation factors
V8247_07345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_KhpA-B
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_2
Helicase_C_3
aRib
Motif
Other DBs
NCBI-ProteinID:
WWX25066
LinkDB
All DBs
Position
complement(1405751..1407949)
Genome browser
AA seq
732 aa
AA seq
DB search
MSDIKTFERTISGRKLVIESGKLAGQANGAVTVRYGDTVILATVVVAKEPRPGVDFLPLT
IDVEERMYAAGRIPGGFIRREGRPSENATLAARLADRPLRPLLPKYWRREIQIIVTVLTA
DQENDPDILGVIGASCALGISEMPFEGPLSAVHVGYIDGEFVINPTHSQLADSKLDVVVA
STKKAVTMLEAGANEAPEDLMYEAIRIGHEANQEIIALQEEMVAAVGKAKWEVSPPVIDA
GLLDKVSAIVDGKLAEAFYQADKSQRQENLGKIKGELMESLGEEFDRGAVMEAYDKKIRQ
LVRSTILDKKERVSGRGIEEIRELSAEVGVLPRVHGSSLFSRGQTQILNIVTLGSLQMEQ
KLDNIAPETSKRYIHHYNFPPYSVGEAKRIGTGRREIGHGALAERALLPVIPSEAEFPYA
LRLVSEAVSSNGSTSMASTCASSLSLMDAGVPIKKAVAGISVGLITDDANPDRFVTLTDI
EGLEDNYGDMDFKVAGTRDGITAIQLDIKLKGISFAVIEATLAQARRAREVILDVMDKAI
SHSRAEMSPYAPRMYKLKIDPSKIGAVIGPGGRVIRAIIEETKTSIDIEDDGTVIIGASD
GEAAKKAIAIIEGMTKDIEPGTTYSGKVTRIMSFGAFMEILPGKEGMVHISELANRRVDK
VEDVLKIGDIVNVKVIEIDSQGRINLSIRALLPPPTEEEKEAMRNQAPPQGGFRRSAPGA
PMERGDRPQFRR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgatattaaaacatttgaacgcaccataagcgggcgtaagctggttattgaaagc
ggtaaactggccggacaggccaatggcgccgtaaccgtccgctatggtgacaccgtgata
ctggcgaccgtggtggtagccaaagaaccgcgccccggtgtggacttcctgccgctgacc
attgacgtggaagaacggatgtacgctgccggacgaattcccggcggttttatccgccgc
gaaggccggccttcagaaaacgccaccctggccgcccggctggctgaccggccgctacgc
ccgctgctgcccaagtactggcgccgcgagattcaaatcatcgtcaccgttttgaccgcc
gaccaggagaatgatcctgatattctcggcgttatcggcgcttcctgcgccctgggtatc
tcagagatgccgtttgaaggcccgctgtccgcggtgcatgtcggctacattgacggcgag
ttcgtcattaaccccacccattctcagttagccgacagcaaactggacgtggtcgtggcc
agcaccaaaaaagcagtcaccatgctggaagccggcgccaatgaagctccggaagacctg
atgtacgaggctatccgcatcggtcatgaggccaaccaggaaatcattgccctgcaggaa
gaaatggtcgctgccgtcggcaaggccaaatgggaagtcagcccgccggtaattgacgcc
ggattgctggacaaagtttccgctattgtggacggcaaactggccgaggccttttaccag
gccgacaaatcccagcgtcaggaaaacctggggaagattaagggcgaactgatggagtcg
ctgggcgaagaatttgaccgcggcgccgttatggaagcctacgataagaaaatccgccaa
ctggtacgctccactattctggataagaaggaacgggtcagcggccgcggcattgaagaa
atccgcgagctgtccgccgaggtcggcgtactgccccgggtgcatggttcatcgctgttc
tcccgcggtcagacccagattttgaacatcgtgactctgggctcactgcagatggaacaa
aagctggacaatatcgccccggagacttccaaacgttatattcaccattataatttcccg
ccttactccgtgggtgaagccaagcggatcggcaccggacgccgcgaaatcggccacggg
gcgctggcggagcgggcgctgctgccggtaatcccgtcagaagcggagttcccctatgcc
ctgagactggtatccgaggcggtcagctccaacggctccacctccatggccagcacctgc
gcatcctccctgtccttgatggacgccggggtgccgatcaagaaagcggtggccggcatc
tccgttggtttgattaccgacgatgccaaccccgaccgttttgtcaccctgaccgatatt
gaaggtctggaagataattacggcgatatggacttcaaggtcgccggcacccgtgacggc
atcaccgccattcagctggacatcaaactcaagggcatcagctttgcggtaattgaagcg
acgctggcgcaggccaggcgcgcccgtgaggtcattctggatgtcatggataaagccatc
agccatagccgcgctgagatgtcgccctacgcaccgcggatgtacaaactgaagattgac
cccagcaagatcggcgccgttatcggccccggcggccgggtgatccgcgccatcattgaa
gagaccaaaacctccattgatattgaagacgacggcaccgttattatcggcgcctccgac
ggcgaagctgctaaaaaggccattgccatcattgagggcatgaccaaggatattgaaccc
ggcaccacctacagcggcaaggtaacccgcatcatgagcttcggtgctttcatggagatt
ctgccgggcaaggaaggcatggttcatatctccgaactggccaaccgccgggtggataaa
gtggaagacgtcctcaagatcggcgatatcgtcaacgtcaaggtgattgagattgattct
cagggccgaatcaatctgtctatccgcgctctgctgccgccgccgactgaagaagaaaag
gaagccatgcgcaaccaggcaccgcctcagggtggtttccggcgctcagcgcccggcgcg
ccgatggaacggggtgaccggccgcaattccgaaggtaa
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