Candidatus Dehalogenimonas loeffleri: V8247_08030
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Entry
V8247_08030 CDS
T10610
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dlf Candidatus Dehalogenimonas loeffleri
Pathway
dlf03020
RNA polymerase
Brite
Enzymes [BR:
dlf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V8247_08030 (rpoC)
Transcription machinery [BR:
dlf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V8247_08030 (rpoC)
DNA repair and recombination proteins [BR:
dlf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V8247_08030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WWX25198
LinkDB
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Position
1552110..1556000
Genome browser
AA seq
1296 aa
AA seq
DB search
MNEVIDFDAIRISLASPEQIRGWSYGEVTKPETINYRTLKPERDGLFCERIFGPTKDFEC
QCGKYKRIRYKGIICDKCGVEVARAKVRRERMGHIELACAVGHIWFTRGIPSRIGLLLDL
STRSLERIIYFSHFVITHVDEVARQAAVDSLEQGRQMELDDREAEINAQVAAMESEGAEI
AEINKLRGDFETERAESEEQTAVIVEQLRGLRRGNLLTESVFFELKTRFPEVFDAKMGAE
AILDLLRSVDLGEMRNHLILETRSSSGQRRKKASKQLQLVEAFRRSGNKPEWMVLTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLSHLLEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGRSVAVSGDHKAKSISDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLH
QCGLPRKMALELFKPFVMHRLVTDGLAPNIKSARRLVERARPEVYDILEDVVKDRPVMLN
RAPTLHRLSIQAFEPVLIDGSAIRIHPLVCAAFNADFDGDQMAVHLPLSKAAVKEAREAM
LSIHNMLLPSSGDPVVTPSLDMVFGCFYLTTTRPGLKGENKVFGSFEEAKRYFDRGIIDL
RAEIDVRTPEGEMVKTTVGRIIFNEALPQGIAFFNKAVDKSTLRRLIGECIKITSDNEMA
LSLDHIKRLGFEFATRSGITIAMTDIAVPGPKAEIIAAADHDADLIEHQYAQGLITDDER
YNGVVEIWLRATDQIGDAIAKGMDNIGNVYMMANSGAKGNVSQIRQMAGMRGLMTNPSGK
IIDFPIKSSLREGLSTIEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDLIIYEED
CGTLDGLWIEEPSEKGILPPLAERIAGRLAAMPVADPQTGEILVDRDGEIDDKKAREITA
AGVTGVFVRSPMSCGSKRGICQKCYWRDLGRGKTVEFYTAVGILAAQSIGEPGTQLTLRT
FHTGGVVGTDITTGLPRVEELFEARPPKAQAIITEIDGNVEIQESDEGRSVRILARENYQ
DEYDLPDNWNVEVADGQVVDMGSVLATAPEADKEAVHLTTDGESVLIARVGGRMSVEGQK
LVIRYEDLDEREYMIPAATHILVANGETVKAGQKLTDGSINPQDILSILGRESVQRYLVE
EVQKVYFSQGVHINDKHIEVIVRQMMNKVRVDSSGDTDLVPGELVDKFRFEDINNKILAE
GGEPATAHTVLMGITRTSLSTESWLAAASFQETTRVLTDAAIHGKKDILAGLKENVIIGK
LIPAQCQSCRDATSEKAAEIESAKLVQIEQLEQPVI
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtaattgattttgatgccatccggatttctctggcctccccggaacaaatt
cgcgggtggtcatacggcgaggtaacaaagcccgagaccataaactaccgtacgttaaaa
ccggagcgcgatggactgttttgtgagcggatttttggccctaccaaagattttgagtgc
cagtgcggcaaatacaagcgtatccgttacaagggcattatttgcgataaatgcggcgtt
gaagtcgccagagcaaaagtccgtcgcgaaagaatggggcatatagaactggcctgtgct
gttggtcatatctggtttacccggggtattcccagccgcatcggtttgttgctggatctc
tctacccgcagccttgagagaatcatctatttctctcactttgtcattacccatgttgat
gaagttgccaggcaagctgcagtggacagccttgagcaaggccgtcaaatggaactggat
gaccgggaagctgaaattaacgcccaggtggccgctatggagtccgaaggcgccgagatt
gccgaaatcaataagctccgcggtgactttgaaactgaacgtgccgaaagcgaagaacag
accgccgttatagttgaacaattgcgtggtcttcgccgtggaaatctgttaacggagagc
gtgttttttgagttgaaaacccggtttccagaagtttttgatgctaaaatgggtgccgag
gcgatacttgaccttttaaggtctgttgatcttggcgagatgcgcaaccacctcattttg
gaaacacgatcgtcttccggacaaaggcggaagaaagcctccaaacaacttcaattggtt
gaggctttccggcgcagcggtaataagccggaatggatggtgctgaccgtattaccggtg
ttgccgcctgatttaaggcccatggtccagcttgacggcggtcggtttgctacctctgat
ttgaatgacctttatcgacgcgtcatcaaccgtaacaaccggttgagtcatcttttagaa
atcggcgcgccggaaattattatccgcaacgaaaagcgcatgttgcaggaagcggttgat
tcattgatagataacggtcgccggggacgcagtgtagctgtgtccggcgatcacaaggct
aaatcaatatccgacctgttaaggggaaagcaaggccggttccggcagaatcttctcgga
aaacgggttgattactctggacggtcggttattgtggtcgggccggatctgaaactacat
caatgcggtctgccgcgcaaaatggctttagagttgtttaaaccatttgtgatgcatcgc
ctggttactgatggtttagccccaaatataaagagcgcccgacgactggttgaaagagcc
agacccgaagtatatgacattcttgaggatgtcgttaaagaccgaccggtaatgctgaac
cgggctccgacgttgcaccggctgtcaattcaggcgtttgaaccagtgctgattgacggt
tcggcgatccggattcaccctctggtctgcgctgcctttaatgctgactttgacggagac
cagatggcggttcatctgccgttatccaaggcggccgttaaagaagcccgggaggccatg
ctttccatccacaatatgttgttgccttccagcggggatccggtagtgacccccagcttg
gatatggttttcggttgtttctatctgactaccacacgccctggcctgaagggtgagaac
aaagtcttcgggagttttgaagaagccaaacgatattttgaccggggcatcattgacctg
cgggcggaaatcgatgtacggacacctgaaggggagatggtcaaaaccacggtcggacgc
attatctttaatgaggccctgccccaggggatagcgtttttcaacaaagctgtggataaa
tcaaccttacgccgtttgatcggcgagtgtattaagatcaccagcgacaatgaaatggcc
ttgtcattggatcacatcaagagactgggctttgagttcgccacccgttcgggtatcacc
attgccatgaccgatatcgctgtccctggtccgaaggcggaaattatcgccgctgctgat
cacgacgctgatttgattgagcaccagtatgctcagggtttgatcacagacgatgagcgc
tataacggcgttgtagaaatctggttgcgagcaaccgaccaaatcggcgatgccatcgcc
aagggcatggataacatcggcaacgtgtatatgatggctaattccggagccaaaggtaac
gtttctcagatcagacagatggctggtatgagaggtttaatgactaatccttccggtaag
atcattgattttcccatcaagtccagtctgcgggaaggtctttctactattgaatacttc
atttctacccatggcgcccgaaaaggtctggccgatacggcattgcgtacttccggttcc
ggctaccttacccggaggttgattgatgttacccaggacctgattatctacgaagaagac
tgcggtaccttggacggtctgtggattgaggaaccttcagagaaaggtattttgccgccg
ttagccgagcgaattgccggacggttggccgcgatgccggtggccgatcctcagactggt
gaaatactggttgatcgggacggtgaaattgatgacaagaaggctagggagattacggca
gccggcgttaccggcgtgttcgtgcgctctccgatgtcctgtgggtccaagcgcggtatt
tgtcagaaatgttactggcgtgacctggggcgcggtaagacggttgagttctatactgcc
gttggtattctggccgctcagagcatcggcgaaccaggtacccagcttactttgcggacg
tttcataccggtggtgtggtgggtacagatattaccaccggtttgcctcgcgttgaagaa
ctgtttgaggcccgaccgcccaaagctcaggcgattatcacggaaattgacggtaacgtt
gaaattcaggagagtgatgaaggccgcagtgtgcggattctggctagagagaactatcag
gatgaatacgatttacctgataattggaatgttgaagtcgccgacggacaagtggtggac
atgggttcggtattggctactgctcctgaagccgataaggaagctgttcatcttactacg
gacggtgaatctgttctgattgccagagtcggtggccgcatgagcgttgaaggacaaaaa
ctggttatcagatatgaagatcttgatgagcgggaatatatgattcctgcagctactcat
atcctggtcgccaatggtgaaactgtaaaagccggacaaaaattgaccgacggttctatc
aacccgcaggatatattgtcgattcttggtcgtgaatctgtacagcggtatctggttgag
gaagttcaaaaagtttacttttctcagggtgttcacattaatgacaagcatattgaagtc
attgtcaggcagatgatgaacaaggttcgcgttgattcttccggcgacactgacctggta
ccgggagaactcgtggataagttccgctttgaggatatcaataacaagatactggctgaa
ggtggagaaccggccactgcgcacacggttttgatgggtattacccgtaccagtttgtcc
accgaatcctggctggcggccgcctcattccaggagaccacccgggtgttgaccgatgca
gccattcatgggaagaaagatattttggccgggctgaaagaaaatgtgatcattggtaaa
ctcattcctgcccagtgtcaatcatgccgggatgcaacatccgagaaagcagcagaaatt
gaatctgccaaactggttcagattgagcaacttgaacagcctgtaatttaa
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