Candidatus Dehalogenimonas loeffleri: V8247_08280
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Entry
V8247_08280 CDS
T10610
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dlf Candidatus Dehalogenimonas loeffleri
Brite
KEGG Orthology (KO) [BR:
dlf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dlf03032
]
V8247_08280 (topA)
03400 DNA repair and recombination proteins [BR:
dlf03400
]
V8247_08280 (topA)
Enzymes [BR:
dlf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V8247_08280 (topA)
DNA replication proteins [BR:
dlf03032
]
Prokaryotic type
DNA Topoisomerases
V8247_08280 (topA)
DNA repair and recombination proteins [BR:
dlf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V8247_08280 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Toprim_4
Toprim_3
Toprim_2
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
WWX25241
LinkDB
All DBs
Position
1605280..1607409
Genome browser
AA seq
709 aa
AA seq
DB search
MVKSKKLVIVESPAKARTLGRFLGSGYTLKASLGHIRDLPKSKIGVDVDNDFTPQYINMR
VKSAVLKELREAAKNSTSIILATDPDREGEAIAWHLVEAIKAVNTPYRRVVFHEITKDAI
EQAFKSPRDLNMNLINAQQARRILDRLVGYNLSPLLWQKVRRGLSAGRVQSVALRIIVDR
EREIDAFVPVEYWTIEAEFTKEAVKAASSFKAILIGAGEKKKITISDQRAAGDLIADLKP
AVFAVGKVTTKTAPREPAAPFITSTLQQEAWRKLRFSAKQTMALAQQLYEGLPLGPEDST
GLITYMRTDSTHVAQSAISETRDYILDKYGHDYLPQKTRQFAGKVKGAQEAHEAIRPTSI
KREPGKIKQYLESNQFKLYQLIWQRMVASQMASAKFENITIDIEAGKTHSGTKYTFRAQS
SDSVFPGFMALYTEGKDEDEEQKVPKLPKLVEKDPLKLLRILDEQHFTQPPPRYTEATLV
KMLEQHGIGRPSTYAPILSVVQQRDYVEKQRGVFKPTELGILIRDILVQQFPEVIDTGFT
AQMENKLDKVAEDGYDWVNVVRDFYIPFAKDLLAAREQLEKVPPPIETSEEECPQCKQDK
LLIKVGRYGKYMECPSCQFRQSFRIHTGVLCPGCPEQAEIIGRYTKKGKIFYGCAAFPKH
KFAMNAKPLPTPCPQCGGLLAEYRDDQVKCTDAKCGYKAKKKDDNNAVT
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaagtaaaaaacttgtcattgttgaatcaccggccaaagccaggactttaggc
agattcttaggttctggctatacgctgaaagcgtcactgggtcatatccgggatttacct
aaaagtaaaatcggtgttgacgttgataacgatttcaccccgcaatacataaatatgcgg
gtgaaatccgccgttttaaaggaacttagggaagcggcaaagaactcgacctcaataatc
ctggcgactgaccctgatcgtgaaggagaagccattgcctggcatttggttgaggctatt
aaggccgtcaacaccccctaccggcgggtagtctttcatgaaataaccaaagatgccatt
gagcaggcatttaagtcgccgcgggatctcaatatgaatttgatcaatgctcaacaagcg
aggcgaattcttgatcgtctggttggatacaacctgtctcctttactgtggcagaaagtc
cggcggggcctttccgctggtcgtgtgcaatcggttgccttgcgtataattgtggaccgc
gaacgtgaaatagatgcgtttgtaccggttgagtattggacgattgaagctgaatttact
aaagaggccgtaaaagctgcttctagtttcaaagcaatactcatcggtgcaggtgagaag
aaaaaaattaccatttcagaccaacgcgctgcgggagatctcatcgctgatttaaaaccc
gcggtatttgcagtcggaaaagttactacgaaaactgcaccgagggaaccagccgcgcct
tttatcaccagtactctgcaacaggaagcctggcgtaaactgagattttcagctaaacag
accatggcactagctcaacaattgtatgaaggattgccactgggacccgaggacagtacc
ggtttaataacctatatgcgtactgactcaactcatgtagcgcaatctgccatttcggaa
accagagactacattttagataaatacggacatgattatctcccgcagaagacacgccaa
tttgcaggtaaagtgaaaggagcccaggaggctcatgaagccatacgcccaactagtatc
aaacgcgaaccgggaaagataaaacaatatttagagtcaaatcaatttaaactttaccaa
ctaatctggcaaagaatggtagccagtcaaatggcatctgccaaatttgagaatattacg
attgatattgaagccggcaaaacgcactccgggactaagtatactttcagggcgcagagt
tcagacagtgtgtttccaggattcatggcgctttacaccgaaggcaaagatgaagatgaa
gagcagaaggtgcctaaactgcctaaactcgttgaaaaagacccgttgaaacttctccgt
attcttgatgaacagcattttactcagcctcctccgcgttacaccgaggcgacgctggta
aaaatgctggaacagcacggcattgggagaccaagtacttatgcacctattctttcagtt
gtacagcaaagagattatgtggaaaagcaaagaggtgtttttaagccgactgaattggga
atattgatccgggatatcctggtgcaacagtttcctgaggtaattgacaccggttttacc
gcacagatggaaaataaattggacaaagtggctgaggacggctacgactgggtaaatgtg
gtcagggatttttacatcccctttgcaaaagacctcttggctgccagggaacaattagaa
aaagttcctccgccgatagagacttctgaagaagagtgtcctcaatgtaaacaggacaaa
cttttaataaaagtaggtcgctacggtaaatacatggagtgtccttcatgtcaattcaga
cagtcattccggattcataccggcgtcctttgtccgggttgtccagaacaagctgaaatt
atcgggcgatatacaaaaaaaggcaagatattttacggttgcgccgcatttccgaaacat
aaatttgccatgaatgcaaagcccttgccaacaccatgcccccagtgcggtggtttattg
gccgagtatcgcgatgatcaggttaagtgtacggatgccaaatgcgggtacaaagcgaaa
aagaaagatgacaacaacgccgttacctga
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