Candidatus Dehalogenimonas loeffleri: V8247_08935
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Entry
V8247_08935 CDS
T10610
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dlf Candidatus Dehalogenimonas loeffleri
Brite
KEGG Orthology (KO) [BR:
dlf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V8247_08935 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlf03021
]
V8247_08935 (rpoD)
Transcription machinery [BR:
dlf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V8247_08935 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CENP-B_N
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
WWX25353
LinkDB
All DBs
Position
1729621..1731144
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AA seq
507 aa
AA seq
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MAKETTKLVTDDEDDEETDQSKKVVVDQEEEEEHEGPKVPHDVNPDELNDDDDEDSESDT
IPEEAEHMMPNLEAPAEQLEHGIVDDPVRMYLHEIGRVPLLNAETEKMLAKKMEAGKRIR
EIRQVCRERDGQNPNSVQVIVCMLQELVKAAETVALLQKQLGLEVSTNFKDAVFAPKLRA
SIEQEIDQELTKSIAEEQNAPVSQIEQALIDLSLNSELLPKKVLDGIPAETDLSEINALV
ASPAFTNRLDHFEHQFKSYLDTIEIESGKAERHLIQANLRLVVSVAKKHIGRGMPLLDLI
QEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLS
ISRSMSQKLGREPTPDEIAVEMELPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIED
QNALPPPDAASRQLLKEQIDSVLDSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRE
RIRQIEAKALRKLRHPTRSRKLKDYLE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagaaaccaccaagttagtcaccgatgacgaggatgatgaggagaccgatcag
tccaagaaggtagtcgttgatcaggaagaagaggaagaacatgagggcccaaaggttccc
catgatgtcaaccccgacgaactcaacgacgatgatgatgaggactccgaatccgatacc
atacccgaagaagcggaacacatgatgcctaatctggaagctccggcggagcaactggag
catggcattgtggatgacccggtgcgcatgtatctgcacgaaatcggccgcgtcccgctg
cttaacgctgaaaccgaaaaaatgctggccaagaaaatggaagccggcaagcgtatccgt
gaaatccgccaggtctgccgcgaacgtgacggccagaatcccaattccgttcaggtcatt
gtctgcatgctccaggagctggtcaaagcggctgaaaccgtcgctttgctgcagaagcaa
ctggggctggaagtctcaaccaatttcaaggacgccgttttcgcgcctaagctccgggcc
agcattgagcaggaaattgaccaggaactgaccaagagtatcgctgaagaacagaatgcg
ccggtgtcgcagattgaacaggcgctgattgacctgtccctcaatagcgaactgctgccc
aaaaaggttctggacggcataccggccgagaccgacctgtcggaaatcaacgcactggtc
gcgtccccggctttcaccaaccgtctggatcactttgagcatcagtttaagagctatctg
gataccattgagattgagtccgggaaggcggaacgccacctgattcaggctaacctccgt
ctggtggtcagtgtggctaaaaagcacattgggcgcggcatgccgctgctggacctgatc
caagaaggcaatatcggcctaatccgggcggtggagaagtttgacttccaccgcggcttc
aagttttccacctacgccacctggtggatccgtcaggccatcacccgggccatcgccgac
caggcccgcaccatccgcattccagtgcacatggtagaaaccattaacaagctgttgtcc
atctcccgctccatgtcccagaagctgggccgggagcccaccccggatgaaatcgccgta
gaaatggagctgccgccggagaaggtccgcgagatcgccaaggtatcgcagctgccggta
tccctggaatcccccatcggtgaggaagaagactctcatctaggtgacttcattgaagac
cagaatgctctgccgccaccggacgccgcttcccgtcagcttctcaaggagcagattgac
agcgttctggacagtctgacgccgcgggaacgccgggtattgcagctccgcttcggtctg
gaagacggccgcagccggacgctggaagaggtcggcaaagagttcaacgtcacccgtgaa
cgtatccggcagattgaagccaaagccctgcgcaagcttcggcatcccacccggagccgt
aaacttaaagattacctggaatag
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