Desulfovibrio legallii: GTC18478_23090
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Entry
GTC18478_23090 CDS
T11922
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dlg Desulfovibrio legallii
Pathway
dlg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dlg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GTC18478_23090 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlg03021
]
GTC18478_23090 (rpoB)
03400 DNA repair and recombination proteins [BR:
dlg03400
]
GTC18478_23090 (rpoB)
Enzymes [BR:
dlg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GTC18478_23090 (rpoB)
Transcription machinery [BR:
dlg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GTC18478_23090 (rpoB)
DNA repair and recombination proteins [BR:
dlg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GTC18478_23090 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-ProteinID:
BGH00348
LinkDB
All DBs
Position
2741929..2746065
Genome browser
AA seq
1378 aa
AA seq
DB search
MGQLTKQFGKIKISLPIPHLLNLQIDSYQKFLQEGLPVEDRKPDEGLEGVFRTVFPIEDF
NKTASLEFVNYEVGEPKYDQAECISKGLTYEAPMRIKVRLVVYDTDEASGNRTIRDIKEQ
DIYFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMR
GSWLDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKRDILEYFYTTEHYRLEQNNTLFW
EVRKDLYRKDNAYADITAPDGNVIVRAGKPITKRGWRLICEAGIEAIEVRPDALDGMFLS
EDAVNPETGEVLAEAADEITPGLLDRLREAGITRLAVLHTKGTDTSSSIRDTLALDRIPD
QQRAQEEIYRRLRPSSPPTAEIAASFFDNLFRNADYYDLSPVGRYKLNQRLGLDEPADTR
ILTDKDILTAIKVLVQLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKER
MSLQEISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGL
TRERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYRVVREGR
VTTDVVHLDASREGDQVVAQANARLDAQGNLLDEFVTVRVKGEVEMRPREEVTLMDISPS
QMVSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVA
PADGLVQYADADRIVVSYEGDLYPKQGGVRAYDLLKFHKSNQNSCFGQKPTCYPGQKVKK
GQILADGPGIDEGQLALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVV
ARDTKLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEE
KLLRAIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIESHDTAVLDQK
EADHMRALTDRTRELLTPHVLGKQIAASVPGKKKGDVLLEAGAALSEDVLAQIPVKKLAG
LFKSKEVNDQVAEQLKGYDRQVEYLKAVYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKL
SVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWG
AKELGRQLAELVDSGAAMQVVRNEVKDVFASEDINALVDDMDDEEFAASVRKLRNGIVTK
TPVFDGATEEEIWGWMDKAGLANDGKTTLYDGRTGVAFKNRVTTGVMYMLKLHHLVDEKI
HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVK
MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKKPRRQEFFQERETEN
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgggccagctcaccaaacagttcggcaaaatcaagatttccctccctatcccccatctg
ctcaacctgcagatagattcctaccaaaaattccttcaggaaggcctgccggtagaggac
cgcaagcccgacgagggcctggaaggcgtgttccgtaccgttttccccattgaagacttt
aataaaactgccagtctggagttcgtcaactacgaagtgggcgagcccaagtacgaccag
gccgagtgcatttccaaaggcctgacctacgaggcccccatgcgcatcaaggtgcgcctg
gtagtctacgacacggacgaggcctcgggcaaccgcaccatccgcgacatcaaggagcag
gatatctatttcggcaccctgcccctgatgaccgaaaaaggcacttttatcatcaacggc
acagagcgggtcatcgtcaaccagctccagcgttcgcccggcatcatttttgagcacgac
ggcggcaaaacgcacaccagccgcaaggtgctctactcctgccgggttatccccatgcgc
ggctcctggctggattttgactttgaccacaaggacatcctctacgtccgcattgaccgc
cgccgcaaaatgcccgccaccattctgttcaaggccatgggcatgagcaagcgggatatc
cttgagtacttctacaccaccgagcactaccggctggagcagaacaacaccctgttctgg
gaagtgcgcaaggatctctatcgcaaggacaacgcctacgccgacatcaccgcgcccgac
ggcaacgtcattgtgcgcgccggcaagcccatcaccaaacgcggctggcggctcatctgc
gaggcgggcatcgaggccattgaagtgcgccccgacgccctggacggcatgttcctttcc
gaagacgcggtaaaccccgaaaccggcgaagtgctggccgaagccgcggacgaaatcacc
cccggcctgctggaccgcctgcgcgaggcgggcatcacgcggcttgccgtgctgcacacc
aagggcacggacacctcctcctccatccgcgataccctggccctggaccgcatccccgac
cagcagcgcgcacaggaagagatctaccgccgtctgcggccctcttcgccgcccacggcc
gaaatcgccgccagcttctttgacaacctgttccgcaacgcggactactacgacctctcg
cccgtgggccgctacaagctcaaccagcgcctgggcctggacgagcccgccgacacccgc
attctgacggacaaagatatcctcaccgccatcaaggtgctggtgcagctgaaggacagc
cacggcccggccgacgacatcgaccacctgggcaaccgccgtgtgcgcctggtgggcgag
ctggtggaaaaccagtaccgcatcggcctggtgcgcatggagcgcgccattaaggaacgc
atgagcctgcaggaaatttccacgctcatgccccacgacctgatcaatcccaagcccgta
gccgcagtgctcaaagaatttttcggcacttcgcagctttcgcagtttatggaccagacc
aactccctttccgaagtgacgcacaaaaggcgtctttcggccctgggccccggcggtctg
acccgtgaacgcgcgggctttgaagtgcgcgacgtgcacacctcgcactacggccgcatc
tgccccattgaaacgccggaaggccccaacatcggccttatcgtctcgctgaccaccttt
gccaaggtcaacgactacggctttatcgaaaccccctaccgggtagtgcgcgagggccgc
gtgaccactgatgtggtacatctggacgccagccgcgaaggcgaccaggtggtggcccag
gccaacgccaggctggacgctcaggggaatctgctggacgaattcgtcaccgtgcgcgtc
aagggcgaagtggaaatgcgcccacgcgaagaagtgaccctcatggatatttcgcccagc
cagatggtctccatctcggcagcgctcattccctttctggagcacgacgacgccaaccgc
gcgctcatgggctccaacatgcagcgtcaggccgtccccctgctgcgctcggaaaaaccc
ttggtgggcacgggcatggaagtggacgttgcccgcgactccggcgcctgcattgtggct
ccggccgacgggctggtgcagtatgcggacgccgaccgcatcgtggtttcctacgagggc
gatctctaccccaagcagggcggcgtgcgcgcctacgacctgctcaagttccacaagtcc
aaccagaactcctgcttcgggcaaaagcccacctgctaccccggccaaaaggtcaaaaaa
gggcagattctggcggacggccccggcattgacgaaggccagctggccctgggcaaaaac
ctggtggtggccttcatgccctggtgcggctacaactacgaagactccatcctcatttcc
gaacgcacggtgaaggaagacgtcttcacctccatccatatcgaagaattcgaggtggtg
gcccgcgacaccaagctgggaccggaagaaatcacccgagatattcccaacgtcagcgaa
gacatgctgcgcaacctggacgaaagcggcatcatccgcatcggcgcggccgtcaagccc
gacgacattctggtgggcaaaatcacccccaagggcgaaacccagctcaccccggaagaa
aaacttctgcgggccatcttcggcgaaaaggccagggacgtgaaaaacacctccctcaag
gttccgccgggggtggaaggcaccattatcgacgtaaaggtcttcaaccgccgctccggc
gagaaggacgaccgcaccctggccattgagtcccacgacactgccgtgctggaccagaag
gaagccgaccacatgcgcgcccttacggaccgcacccgcgagctgctgaccccgcacgtg
ctgggcaagcagattgccgcttccgtgcccggcaaaaagaagggcgacgtgctgctggaa
gcgggcgccgcgctgagcgaagacgtactggcgcagattcccgtcaaaaagctggccggg
ctcttcaaaagcaaggaagtcaacgaccaggtggcggagcagctcaagggctatgaccgc
caggtggaatatctcaaggccgtctacgactccaaacgcgaaaaagttaccgaaggcgac
gacctgccccccggcgtcatcaaaatggtcaaggtgcacatcgccatcaagcgcaagctc
tcggtgggcgacaaaatggccggccgccacggcaacaagggcgtggtttcctgcatcttg
ccggaagaagacatgcccttctttgccgacggccgccccgtggacatcgtgctcaacccc
ctgggtgtgccttcgcgtatgaacatcgggcagatcatggaaacgcatctgggctggggc
gccaaggaactgggccggcagctggccgaactggtggattccggcgcggccatgcaggtg
gtgcgcaatgaggtcaaagacgtctttgcctctgaagacatcaacgccctggtggacgac
atggacgacgaggaatttgccgcctcagtgcgcaagctgcgcaacggcatcgttaccaag
acccccgtgtttgacggcgccactgaagaagaaatctggggctggatggacaaggcgggg
ctggccaacgacggcaagaccaccctttacgacggccgcacgggcgtggccttcaaaaac
cgggtgaccacgggcgtcatgtacatgctcaagctgcaccacctggtggacgaaaaaatc
cacgcacgctccacgggcccttactctctggtcacccagcaacccctgggcggcaaggcg
cagtttggcggccagcggctgggcgaaatggaagtctgggccctggaggcctacggcgcg
gcctatctgctgcaggagttcctcaccgtcaagtccgacgacgtgaccggtcgcgtgaag
atgtacgaaaagatcgtcaagggcgacaacttcctggaagccggcctgcccgaatccttc
aacgtgctggtcaaggagcttatgagcctcggcctcaacgtgaccctgcaccaggaagaa
ggcaaaaaaaagccccgacgccaggagttcttccaggagcgtgaaaccgagaactag
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