Desulfonema limicola: dnl_08670
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Entry
dnl_08670 CDS
T07101
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dli
Desulfonema limicola
Pathway
dli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dnl_08670 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dli03019
]
dnl_08670 (pnp)
03016 Transfer RNA biogenesis [BR:
dli03016
]
dnl_08670 (pnp)
Enzymes [BR:
dli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
dnl_08670 (pnp)
Messenger RNA biogenesis [BR:
dli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
dnl_08670 (pnp)
Transfer RNA biogenesis [BR:
dli03016
]
Prokaryotic type
tRNA degradation factors
dnl_08670 (pnp)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
SLS1_KH2
S1_2
KH_2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
QTA78643
UniProt:
A0A975GEX4
LinkDB
All DBs
Position
complement(939426..941522)
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AA seq
698 aa
AA seq
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MELLLTADMGGRPLTIQTGKVARQASGSAVLQYGDTIVLVTVVSSNDQRSGTDFLPLSVE
YQEKIYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFPKDYFNEIQVIATVLSMD
QENDPDILAMIGASTVLEISDIPFAGPIAAVRVGRIDNEFIINPPISRWEECDINIIVAG
SKTGVVMVEGGGNIISEKEMLDAVFFGHQAMQPVIDLQVKLKESVGKPKRILVPAEKDQA
LIDKLENIAASRIRETVLIPTKIERNTGLHELKKEIFESLGQDYADRRDEVYGILNNIQK
TVCRNLVLKEGRRIDGRKFDEIRPISCQAGILPRPHGSALFTRGETQVLAVLTIGSGRDE
QRIETLQGEDSRRFMLHYNFPPFSVGEVKRMGGPSRRDIGHGSLASRALEKVIPVTDDFD
YTIRLVSEVLESNGSSSMGTVCSGTLALMDGGIPIKEPVSGIAMGLVSDGDNVVILSDIL
GDEDHTGDMDFKVTGTSQGITALQMDIKIHELSKDIMEKALEQARAGRLHILDKMMETLN
KPRKNISPYAPKTMSIKINPDKIRDIIGPGGKMIRLIQSETNTSIEIDDSGIVKISASSQ
EEADAALARINEITIEPEVGTIYEGTVVKTTDFGAFVQILPGTDGLVHISQLSTQRVKKV
TDVVKEGETLKVKILEISRDGKIRLSHKAVLEEENAGK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaattattacttacagcagatatggggggccgtcccctgactatccagaccggaaag
gttgccagacaggcatctggttcggcagtacttcaatatggagacacaattgtactggtt
accgtagtatcttcaaatgaccagaggtcaggaaccgactttttacccctttcagttgaa
taccaggaaaagatatatgcagcaggccgcatacctggaaactatttcagacgcgaaatc
ggaagacccagtgaaaaagaaacccttacagctcgtcttatagaccgtcctatcaggccc
ttgtttccaaaagactattttaatgaaatccaggtcatagcaactgttttgtccatggat
caggaaaatgaccctgacatcctcgctatgataggagcttcaactgtcctggaaatatct
gacataccatttgcagggcctattgcggcagtgcgtgtcggcagaatagataatgaattt
ataatcaatcctcccataagcaggtgggaagaatgtgacataaatatcattgttgccggt
tcaaaaaccggtgttgtaatggtagaaggcggcggaaacattatcagcgaaaaagagatg
ctggatgctgtatttttcgggcatcaggctatgcagcctgtaattgatctccaggtaaaa
ctaaaagaatctgtgggtaaacccaaacgcatccttgttcctgctgaaaaagatcaggca
ttaattgataaactggaaaatattgcagcatccaggatcagggaaacagttttgattcca
acgaaaattgagcggaatactggattgcacgagctgaaaaaagaaattttcgaatctctt
ggacaggattatgccgaccgcagggatgaagtttacggaattttaaacaatattcagaaa
accgtgtgccgtaaccttgttttaaaagaaggcaggcggattgacggcagaaaatttgat
gaaatccgtcctatttcctgtcaggcaggtattcttcccagaccccacggcagtgcatta
tttaccaggggtgaaacccaggtactggcagttcttacaattggatcaggcagggatgaa
caaagaattgaaacccttcagggagaagacagcaggcgctttatgcttcactataatttt
ccgcctttttcagttggagaggtcaagcgcatgggcggtcccagcagacgggatatagga
catggatcactggcatcaagggcccttgaaaaggtaatacccgtaacagatgactttgat
tataccatcaggcttgtttcagaggttctggaatcaaacggttcttcatctatgggcact
gtatgctcaggaacacttgcactcatggatggaggcattcccataaaagaacctgtatca
ggtattgccatgggtctggtttcagatggagacaatgtggttatattatctgatattctc
ggagatgaggaccataccggagacatggattttaaggttacaggcacaagccagggaatt
actgcccttcaaatggacattaagatccatgaactttcaaaagacatcatggaaaaagct
ttggaacaggcccgggcaggaagacttcacatccttgacaagatgatggaaaccctgaac
aaaccgcgtaagaatatttccccttatgcacccaagaccatgagcataaagattaatcct
gataaaatcagggatataataggtcctggcggaaagatgatccgcttaattcagtctgag
accaatacaagcattgaaattgatgattcaggcattgtaaaaatctcggcatcatcccag
gaagaagcagatgctgcacttgcaagaatcaatgaaattacaatagaacctgaagttggt
acaatatatgaaggaactgttgtcaaaacaactgattttggagcatttgtccagattctg
ccaggaactgacggtcttgttcatatttcccagctttccactcagcgggttaaaaaggta
acagatgttgtcaaagaaggagaaaccttgaaggttaaaatccttgaaataagcagagac
ggaaagatccgcctgagtcataaggctgttctggaagaggaaaatgccggtaaataa
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