Desulfonema limicola: dnl_10790
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Entry
dnl_10790 CDS
T07101
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dli
Desulfonema limicola
Pathway
dli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
dnl_10790 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dli03021
]
dnl_10790 (rpoC)
03400 DNA repair and recombination proteins [BR:
dli03400
]
dnl_10790 (rpoC)
Enzymes [BR:
dli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
dnl_10790 (rpoC)
Transcription machinery [BR:
dli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
dnl_10790 (rpoC)
DNA repair and recombination proteins [BR:
dli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
dnl_10790 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Rotamase_2
BSH_RND
Apocytochr_F_C
Rotamase
Rotamase_3
Motif
Other DBs
NCBI-ProteinID:
QTA78837
UniProt:
A0A975GF30
LinkDB
All DBs
Position
1199178..1203566
Genome browser
AA seq
1462 aa
AA seq
DB search
METLYDFFAKPMDPKNYNGVRIALASPEQIREWSYGEIRKPETINYRTFKPEREGLFCAK
IFGPIKDYECNCGKYKRMKHRGVICEKCGVEVIQSKVRRERMGHIDLACSVAHIWFLKSL
PSKIGNLLDLTLKNLEKVLYFDSYIVIDPKDTGLSKAQMLSEVKLREAQETYGFDKFKAG
IGAEAIRELLEDIDLESLYKELRIDIRATTSVAKRQKLSKRLRIVDAFRRSGVSPVWMVM
DVIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLMDLNAPDIIVRNEKRML
QESVDVLFDNGRHGRVITGTNKRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRTVITTGP
NLRLHQCGLPKKMALELFKPFVYYRLEQKGLVSTVKSAKKMVERETPEVWDTLDEVVREY
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVESQIE
ARILMLSSNNILSPANGSPIIVPSQDIVLGIYYMTLAIPGAVGSGMIFSSTDEVRSAYDA
GSIDLHAEISVRMGRERVNTTVGRIILWEIIPKDNIVKMRHIHFTEEAEAVSALEQIRDG
AGFVDMVKKYSKDLDIHPEGLIGTLRKDNFQRIFNTDEESVEKIFSLEPGQISDIIGNNG
NFYLFEIINKRPDVPYKTVNKVMDKKALRDLVDKVYRNLGAKATVILSDRLKDIGYRYST
IGGLSISIDAMIIPPKKWDILNQAENQVTEIGRQYTEGLITQGEKYNKVVDIWAKATDDI
ANEMMSAMKISGTANESNVQTQGSAKAEGFNPVFMMADSGARGSKDQMRQLAGMRGLMAK
PSGEIIETPITANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLADVAQDCTV
SEPDCGTLVGVEVEALMEGGEIIQRLGERILGRVVAEEDIRDPFTDEVLVSVGDEIDEIA
VEKIESAGLTRVIIRSVLTCRTRHGVCAKCYGRDLSHGRIVEIGQAIGILAAQSIGEPGT
QLTMRTFHIGGTASRRVEQADIRARIDGTVRFMDLKTVKNALGEYIVMDRQGGEIAIMGD
TGRELERFPVIYGAHIVAKEEQKVKAGDLLAVWDPFTTPIITEVDGIVKYGDITLGKTLQ
EKVDPVTGKSSRTIIEAKIAEVRPRISIKTSDGKTATLPGSSGMARYPLPVDAILLIEEG
DSVKAGDVLAKLPRATTKTKDITGGLPRVAELFEVRKPKETAVLSRIDGYISISKGTKGK
QKVTVTPADSGEKEEYLIPRGKHINFYEGDYVRAGEPLIGGAAVPQDILNIKGEVALARY
LVDEVQEVYRLQGVRINDKHIEVIVRQMMRRVKITDVGDTDFIVEEQVDKTRFEDINLAV
KAEGGKPSEAEPLILGITKASLSTDSFISAASFQETTKVLTEASIAGAEDYLRGLKENVI
MGRIVPAGTGFPKYTNLEIELD
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
ttggaaacattatacgatttttttgcaaaacctatggatcccaaaaattataatggggtt
cgtattgcccttgcttcaccagaacagattcgagagtggtcatacggggaaattcgaaaa
cctgaaactattaattatcgaacctttaaaccagaacgggaaggtttgttctgcgctaaa
atttttgggcccataaaagattacgaatgtaattgcggcaaatataaacgcatgaaacat
cgaggggttatctgtgagaagtgcggggtcgaagttattcagtccaaggttcgaagggag
cgtatgggccatattgatctggcatgttcagtggctcatatctggtttcttaaaagtctg
cccagcaagataggtaatcttcttgatcttacattgaaaaatctggaaaaagtactttat
tttgattcttatattgttattgatcccaaggataccggactgtctaaagcccagatgctt
tcagaagttaaattaagagaagcacaggaaacctatggttttgataaattcaaggcaggc
ataggtgcagaagccataagggagctgctggaagatattgatcttgaatcactttacaaa
gaattgcgcattgatatcagggccacaacttcagttgcaaaaaggcagaagttgtccaaa
cgtcttagaatagtggatgctttccgaagatcaggagtgtcgcctgtctggatggttatg
gatgttataccggttttgccgcctgatttgcgccctctggttcctctggaaggaggaaga
tttgcaacctctgatctgaatgatttgtaccgccgggtaatcaatagaaataacaggctt
aaaaggctgatggatctgaatgcacctgatattattgtgcgcaatgaaaaacggatgctt
caggagtctgttgatgttctttttgataatggccggcatggaagagttattacaggaacc
aacaaacgccctctcaaatcattaagtgatacactaaaaggcaagcagggccggtttcgc
cagaatcttttgggaaaacgtgttgattattcaggaagaacagttattacaacaggtcct
aatcttcgtcttcatcagtgcgggctgcctaaaaagatggcacttgagctttttaaacct
tttgtttattaccggttagagcaaaaagggcttgtttctactgttaaaagtgcaaaaaaa
atggtggaacgcgagacccctgaggtatgggatactttagatgaagtagttcgagaatat
cctgttatgcttaaccgtgcgcctacacttcaccgtcttggaattcaggcatttgagcct
acacttatagaaggcaaggctattcagcttcatcccctggtctgtactgcatttaacgcg
gattttgatggagatcagatggctgtgcatgtgcctttgtctgttgagtcccagatcgaa
gccaggatactcatgctttccagtaataatatcctgtctccggccaatggctcccccatt
attgttccaagccaggatattgttctaggtatttattacatgacccttgcaattccgggt
gctgttggaagcgggatgatattctcaagcactgacgaggttaggtctgcatatgatgcc
ggaagtatagatcttcatgcagaaatttctgtgcgtatgggcagagaaagggttaatact
actgtgggccgcataatactttgggagattattccaaaggataatattgtaaaaatgcgc
catattcactttactgaagaagcagaagcagtttcagcacttgaacagattcgtgatgga
gccggttttgtggatatggtaaaaaaatacagtaaagacctggatattcatcctgaaggg
ctgataggtactctgcgtaaagataatttccagcgtatatttaatactgatgaagagtct
gtggagaaaattttttctttggaaccaggacagatcagtgatattattggtaataatgga
aatttttatctttttgaaattataaacaaacgtcctgatgtgccttataaaacagttaat
aaggttatggataaaaaagcattaagggaccttgtagataaggtttatcgtaaccttggg
gcaaaggctacggttatactgtctgaccgcctcaaagatattggataccgttattcaaca
ataggcggtctttcaatttccattgatgccatgattattcctcctaaaaaatgggatata
ttaaaccaggctgaaaatcaggtaacagagataggacggcaatatacagaaggtttgatt
actcagggtgaaaaatataacaaggttgttgatatctgggcaaaagcaacggatgacata
gctaatgaaatgatgtcagctatgaaaatcagcggaactgctaatgaaagcaatgttcaa
acacagggaagtgcaaaagcagaaggttttaacccggtgtttatgatggcagattccgga
gctagaggttctaaagatcagatgagacagctggcaggaatgcgtggtttgatggccaaa
ccatcaggtgaaattattgaaactccgattactgccaattttcgggagggcttgactgtt
cttcaatattttatttccacacacggtgcccgcaaaggtttggcagatacagcacttaaa
actgctaactcaggatatttgacacgccgtctggcagatgttgctcaggactgtacagta
tcagaacctgactgcggaaccctggtaggagttgaagtagaagcactgatggaaggcggt
gaaattattcagcgtctgggtgaacgtattttaggccgtgttgtagctgaagaagatatc
agagacccgtttacagatgaagttcttgtttcagtgggagatgaaattgatgaaatagca
gtagaaaagattgaatctgccggactgacaagggtaataataaggtctgttttaacatgc
agaaccaggcacggagtctgtgccaaatgttatggccgagatttatctcatggccgtatt
gtagaaatcggccaggctataggtattttggcagcacagtcaataggcgagccaggaacc
cagcttacaatgcgtacctttcatattggaggtactgcaagcaggcgtgttgagcaggct
gatattagggcacgcatagacggaacagtgcgttttatggaccttaaaacagttaagaac
gcacttggtgaatacattgtaatggatcgccagggtggagaaattgctatcatgggagat
actggaagagaacttgagaggtttcctgtgatctatggtgctcatattgtagcaaaggaa
gaacaaaaagttaaagccggagatcttctagctgtatgggatccttttactactcctatt
attacggaagttgacggcatagtaaaatatggtgatattacactgggaaaaacccttcag
gaaaaggttgatccagttacaggaaaatcaagcaggactattatagaggccaagatagcc
gaggtaagacccaggatatcaatcaaaacttcagacggtaagactgccactctgcctgga
tcatcaggtatggcaagataccctcttcctgtagatgctattcttcttattgaagaaggc
gacagtgttaaagctggagatgtgttagccaagcttcccagagctactacaaaaacaaag
gatattaccggtggtctgccgcgtgtagctgaattatttgaagtccgcaagcctaaagaa
acagcagttttaagccgtattgacggttatatttccatatcaaaaggaactaaaggaaaa
cagaaggttacagtaactcctgccgattcaggggaaaaggaagaatatcttatcccaagg
ggcaagcatatcaatttttatgaaggggattatgtgcgtgcaggagagcctcttattgga
ggtgctgctgttcctcaggatattttaaatatcaaaggagaggtcgctcttgccaggtat
cttgtagatgaggtacaggaggtatataggctccaaggtgtaagaattaatgataaacac
attgaggttattgtccgtcagatgatgcgccgggtaaaaattactgatgttggagataca
gattttattgttgaagagcaggttgataaaactcgatttgaagatattaatttagctgta
aaagctgaaggcggaaagccaagtgaggctgaaccgcttattctgggcattaccaaggca
tctttgagtacagatagttttatctcagcagcatcttttcaggaaacaacaaaggtattg
acagaagcatctattgcaggagcagaggattatctaagaggccttaaggaaaatgttatt
atgggaagaattgttccggcaggtacagggtttcccaaatataccaatctggaaattgaa
ttggattag
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