Desulfonema limicola: dnl_11600
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Entry
dnl_11600 CDS
T07101
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V, subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dli
Desulfonema limicola
Pathway
dli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
dnl_11600 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dli03400
]
dnl_11600 (recB)
Enzymes [BR:
dli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
dnl_11600 (recB)
DNA repair and recombination proteins [BR:
dli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
dnl_11600 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QTA78913
UniProt:
A0A975GF62
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All DBs
Position
complement(1273749..1276640)
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AA seq
963 aa
AA seq
DB search
MDNCLNSGNKNIYLFKEFNKFTTDVLIKVTNKGHKPPEHLFFDLCSDLLEKQTSLLDVFN
RQLLYLQMELFNYVQQEMQTRKDSANIQSFDDLLLKLHKALVQKGGDILAQKIRGKYLAA
LIDEFQDTDPVQYEIFKNIFHNHRILFLIGDPKQAIYGFRGADIFAYMSAKQDSKYAYTL
GYNWRSEPGLITAVNTLFQSSDQAFIYGEIPFEPVTSPENRPGKKRLMLSLDQGEKIPLQ
LWIPESEKLTDSSKVLGKGIAEGLIVKAVAGEISRLLDLGKQGRVCIDNNPVLPGDIAVL
VRKNSEAKMIQDALLNLGIPGVVYSTGDIFDTHEALEIERIMAAAANPRHERLMRSALAT
DMLGLKGHELFELAEDEDAWEKWLIRFKQYSHIWETRGFIHMFKYFILRENVLPRLMSLA
DGERRATNILHLSELIHQAGIEKKTGLSGLVKWLSEQRTRKDRRPEEHPLRLESDDNAVK
LVTIHKSKGLEYPIVFCPFTWGGAKNYKSKDPVLFHDEENNRSLTFDIGSEFIDKNRSYA
VKEELAENLRLLYVALTRARNRCYLVWGRFNKSETSAPAYLFHSNISGTDDIITTTVNKY
KSLNDETLGRELEQIQERSRGTINLSVMPDKDGLVFTPGSNYNNFLNCRNFKGSIINDFR
VSSFSSLVSGQHYRAELADYDELDETRNNIKEIESEPGDFLPPDPLSFFAFPRGAKPGTC
IHEIFEYLDFTEKNLEVIEKLVKEKLDKYGFETSWTAGICHMIQNVLSIPLLKDQNLTLS
RISGKDRINELEFYFPLNAVSCEDIKTVFAGNKMPEFSKQMAQLTFSRVQGFMKGYIDLV
FQFNGKFYLADWKSNFMGENYQDYSQDNIYRKMRESFYILQYHIYTLALHQYLKTRISDY
DYNKHFGGVFYLFLRGIDPAAGNRYGIFFDRPDRELIISLSKKLMGMPSTKSAQPPEKQP
HNA
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggataactgcctgaattcaggaaataaaaatatttatttatttaaagaatttaataaa
tttaccactgatgtacttataaaggttacaaataaaggtcataaacccccggaacattta
ttttttgatttatgcagtgatttacttgaaaaacagacttctcttttagatgtatttaac
aggcaactgctttatctccaaatggaattgtttaactatgtacagcaggaaatgcaaaca
aggaaagattctgcaaatatccagtcttttgacgaccttcttttaaaactgcataaagca
cttgtccagaaaggcggggatattctggcacaaaaaattcggggaaaatatcttgcagcc
ctcatagatgaatttcaggatactgaccctgttcaatatgagattttcaaaaatattttc
cataatcacaggatactttttctcataggcgatcccaagcaggccatatacgggtttcga
ggtgctgatatttttgcatatatgtcagctaaacaggattcaaaatatgcttatacactt
ggatataactggcgttctgagcctggattaataactgctgtaaataccctttttcaatcc
agtgatcaggcatttatttatggcgaaattccttttgaacctgtaaccagccctgaaaac
aggcctgggaaaaaaaggctaatgctttcccttgaccagggagaaaaaatacccctccag
ttatggattccagaatctgaaaaactaacagattcttctaaggttttgggtaagggcatt
gctgaaggactgattgttaaggcggttgctggagaaatttccaggctccttgatctggga
aaacagggcagggtgtgtattgacaacaatccggttttacctggagatatcgcagttctg
gttcgtaaaaattcagaagcaaagatgattcaggatgctctgttaaatcttgggattcca
ggcgtggtttacagtacaggagatatttttgatacacatgaagcccttgaaatagaacgt
attatggccgctgctgcaaatccgcggcacgagaggctgatgcggtctgcacttgcaaca
gatatgctgggtttaaaaggacatgaattgtttgaacttgctgaagatgaagatgcctgg
gaaaaatggcttatacgattcaaacaatatagtcatatatgggaaacacgcggttttatc
catatgtttaaatattttatcctgcgtgaaaatgttcttcccaggcttatgtcccttgct
gatggagaaagaagagccactaatatcttacacctttcagaacttatccaccaggcaggt
attgaaaaaaagacaggcctgtctggtctggtaaaatggctttcagaacagagaaccagg
aaagaccggcggcccgaagaacatcccctgcgcctggaaagtgatgacaatgcggtaaaa
ctggtaacaatacataaaagcaaggggcttgagtatcccattgtattttgtccttttaca
tggggcggtgctaaaaattataaaagtaaagaccctgtgcttttccatgatgaagaaaat
aacaggagtcttacttttgacataggttctgaatttatagacaaaaatagaagctatgct
gtaaaagaagagcttgctgaaaatctgcgccttctttatgtagctcttacccgtgccagg
aaccgttgctatctggtctggggacggtttaataaatctgaaacatctgctcctgcttac
ctttttcattccaatatatcaggaacagatgatattataaccacaacagtaaataaatat
aaatctttgaatgatgaaactctgggcagagaactggaacaaattcaagagcgttcccgg
ggtactataaatctttctgtcatgcctgacaaagacggacttgtttttacaccaggttca
aactataataatttcttaaactgccgaaattttaaaggcagcataatcaatgatttcagg
gtttccagcttttcatcattagtatcaggccagcattatagagcagagcttgcagactat
gatgaacttgatgaaaccagaaataatatcaaggaaatagaatcagaaccaggggacttt
ctgccccctgaccccttgagcttttttgcctttcccagaggagcaaagcctggaacctgt
attcatgagatatttgaatatcttgattttacagaaaaaaatcttgaagttatagaaaaa
ctggttaaagaaaaacttgataaatatggatttgaaacatcatggactgccggtatatgc
catatgattcaaaacgttctctccatcccgcttttaaaagatcaaaacctgactttatcc
aggatttcaggcaaagaccgtattaatgaactggagttttattttcctttaaatgcagtt
tcatgtgaagatataaaaacagtatttgcaggaaataaaatgcccgaattttcaaaacaa
atggcacaactgactttttccagggttcaggggtttatgaaaggttatatagatctggtt
ttccagtttaatggaaaattctatttagcagactggaaatctaattttatgggggaaaac
taccaggattacagccaggataatatttacagaaaaatgagagaatctttttatatcctt
caatatcatatttacacccttgccctgcatcaatacctgaaaactagaatttccgattat
gattataacaaacattttggaggtgttttctacctttttctcagaggtattgacccagca
gcagggaacaggtatggaatcttttttgacagacctgacagggagctgattatttctctt
agtaaaaagcttatgggaatgccttccaccaaatccgctcaacccccagagaaacaaccg
cataacgcctga
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