Desulfonema limicola: dnl_45660
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Entry
dnl_45660 CDS
T07101
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dli
Desulfonema limicola
Pathway
dli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dnl_45660 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dli03019
]
dnl_45660 (cshA)
03009 Ribosome biogenesis [BR:
dli03009
]
dnl_45660 (cshA)
Enzymes [BR:
dli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
dnl_45660 (cshA)
Messenger RNA biogenesis [BR:
dli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
dnl_45660 (cshA)
Ribosome biogenesis [BR:
dli03009
]
Prokaryotic type
rRNA helicases
dnl_45660 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTA82195
UniProt:
A0A975BBG6
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All DBs
Position
4898768..4900489
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AA seq
573 aa
AA seq
DB search
MSFKTLGLCTELLQSADELGFTSPMPIQEKAIPILLSGEKDFVGLAQTGTGKTCAFGLPL
IQKIDNTSPHTQGIVVCPTRELCLQITSDLKNYARHMKTINIVAVYGGASIVNQIRQLKV
KPHIIVATPGRLMDMMERKAVNLSQINYAVLDEADEMLNMGFQEDINHILKATPEHRKIW
LFSATMPRGVAAIAKNYLKNPVEITVGAKNESPKNISHKCYVIHEKNRYLALKRIIDFTP
DMFGLIFCRTRKDTQIVAEDLMKDGYQAESLHGDLSQSQRDYVMRKFRQGTVRLLVATDV
AARGLDVDDITHVIHYNLPDEMETYTHRSGRTARAGKSGASIALINTKEKYRIGNLEKKV
NIKFDFAKLPDGKEICQKQLLSMIDKIMKTDVNHKEMEEYFPAVCDALSQFDKEEIIRRF
VSSEFNQFLDYYRHADDINVKTSKERPQIKARTSVKARTSVKEKSSPSSRPLKVKNNGKR
IRIEKTQRFFINVGRLDKINEGAIVRLICDKSGIRSGMIGEIDLNREFSFFEVEQKAAAQ
VSSSLNNAVLDGRPVKVQKVLKNKKNTKRDHNI
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaaaacattaggactttgtacagaactgcttcaatcagcagatgaacttgga
tttaccagccccatgcctattcaggaaaaagctataccaatcctgctttccggtgaaaaa
gattttgtggggcttgcacagacaggaactggaaaaacatgtgctttcggcctgcccctt
atccagaaaattgataatacttctccccatacccagggaatagtggtctgccccacccgt
gaattatgtctccagattaccagtgatctgaaaaattatgccaggcatatgaaaacaatt
aatattgttgcagtttacgggggtgccagtatagtaaatcagattcgccagcttaaagtt
aaaccccatatcatagttgccactccaggcaggcttatggatatgatggagcgcaaggct
gttaatctttcccagattaattatgctgttttagatgaagctgatgaaatgctgaacatg
ggttttcaagaagatattaatcatattctgaaagcaacgcctgaacatcgaaaaatctgg
cttttttctgcaaccatgcccagaggtgttgctgctattgcaaaaaattatctgaaaaat
ccagtagagataactgtgggagcaaaaaatgaaagccccaaaaatatttcccataaatgt
tatgtgatccatgaaaaaaacaggtacctggctttaaaaagaattattgattttacccct
gacatgtttggtcttatcttctgcagaacaagaaaagatactcagatagtagctgaagat
ttaatgaaagacgggtatcaggctgaatcccttcacggagatttgtcccagagccagcgt
gattatgttatgcgtaaattcaggcagggcactgtcaggcttcttgtagcaacagatgtt
gcagcaaggggactggatgtggatgatataacccatgtaatccactataatcttcctgat
gaaatggaaacctatacccatcgaagcggcagaacagccagggcaggaaaatcaggtgca
tccattgcccttattaatacaaaggaaaaatacaggatcggcaacctggaaaaaaaggtt
aatattaaatttgactttgccaaactgcctgatggaaaggaaatctgtcaaaaacagctt
ttatccatgatagacaaaatcatgaaaacagatgttaaccataaagaaatggaagaatat
tttcctgctgtctgtgatgctttaagccagtttgacaaagaagagattatcaggcgtttt
gtttcatcagaatttaaccagtttctggattattaccgccatgctgatgatattaatgtt
aaaacatccaaagaaagaccccagataaaggccagaacgtcagttaaggccagaacttcg
gttaaggaaaaatcatcgccttcttccaggcctttaaaagtaaaaaataatggaaaacgt
atcaggatagaaaaaacccagcgtttttttattaatgtaggcagacttgacaagattaat
gaaggagctattgtccgcctgatctgcgataaatcaggcattcgttccggcatgatcggt
gagattgatcttaaccgtgaattttcattttttgaagtagaacaaaaagcagccgcccag
gtcagcagttcccttaacaatgctgtgttagacggcagaccagttaaggttcaaaaagtt
cttaaaaacaaaaaaaacaccaaaagagaccataatatttaa
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