Desulfonema limicola: dnl_48050
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Entry
dnl_48050 CDS
T07101
Name
(GenBank) Ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dli
Desulfonema limicola
Pathway
dli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dnl_48050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dli03019
]
dnl_48050
03009 Ribosome biogenesis [BR:
dli03009
]
dnl_48050
Enzymes [BR:
dli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
dnl_48050
Messenger RNA biogenesis [BR:
dli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
dnl_48050
Ribosome biogenesis [BR:
dli03009
]
Prokaryotic type
rRNA processing factors
dnl_48050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QTA82430
UniProt:
A0A975BBX7
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All DBs
Position
complement(5168563..5170026)
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AA seq
487 aa
AA seq
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MSSKILINALDPEECRIAKVTDSKLEEFHIESTAKEITHGNIYKGIITRIEPGLQSVFVD
YGAERHGFLQKHEIHPDYFLDNLSGDQSIKSIVKRGQELLVQVTKDPVMKKGAMLTTYIS
LPGRYIVLMPGSKNTGISRKIEDEEERSRLKELVNSVMLPQGFGIIVRTAGSNCNKTSLI
KDLKYLLRLWENINNKGVGEDAPALLYKERNLVLRSIRDYFTPDITEILVDDEAVHHEVK
NFFHIISPKHTRIVKLHTGPKPIFTKHALEDQIASIFENRVELKSGGSIVIDQTEALVAI
DVNSGKGIHKKNIEQTAFSTNIEAAEEIARQLRMRDLGGLIVIDFIDMRDMKHKQEVERS
LKSYVKADKARIKLGKISKFGLMEMSRQRIRPSIEYGGYLPCKHCQGKGLLPSAETLAIS
FLRKLHLETLKEGITHVKGIVPVSVAGYLLNSKKKEILDLEMRREIRIVIEGDASMLPRE
SRILCEQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaaaattctaatcaatgcacttgatcctgaagaatgcagaattgcaaaagta
actgacagcaagcttgaagaatttcatattgaaagtacggcaaaggaaattacccacggc
aatatttataagggtataattacacgcattgagcctggtttgcagtcggtttttgtggat
tatggagctgaacgtcatggttttctgcaaaaacatgaaattcatcctgattattttctt
gacaatctttcaggggatcagtcaattaaaagcatagtcaaacggggacaggaacttctt
gttcaggttacaaaagatcctgttatgaaaaaaggtgcaatgctgactacctatatttcc
ctgccggggcgttatattgtgcttatgcctggcagtaaaaatacagggatttcacgaaaa
attgaagatgaagaagaacgaagcaggttaaaagaactggtaaattccgtaatgctgcct
cagggttttggaatcattgttagaacagccggttctaactgcaataaaaccagcctgata
aaagatttaaaatatctgcttcgtttatgggaaaatattaataacaagggagtgggagaa
gatgcgcctgcattgttatacaaagaaagaaacctggttttaaggtctatcagggattat
tttacaccagatataacagaaatccttgttgatgatgaagctgtccatcatgaagtcaag
aatttttttcatatcatatctccaaaacataccaggattgttaaacttcatacaggcccg
aaacccatatttacaaaacatgcgcttgaagatcagatagcctcaatttttgaaaacagg
gttgaactcaaatcagggggttctattgttattgaccagacagaagccctggttgcaatt
gatgtaaattcaggtaaaggtattcataaaaaaaatattgaacaaacagcattttctacc
aatattgaggctgctgaagagattgcacgtcaattacgcatgagagacctgggagggctg
attgttattgattttattgatatgagagacatgaaacataagcaggaggttgaaagaagc
ctgaaatcttatgtaaaggccgataaagccaggataaaattggggaaaatatccaaattc
ggccttatggaaatgtcaaggcagaggatcaggccgtccattgaatatgggggatatctg
ccatgtaaacactgtcagggcaaaggtttgctgccatcagcagaaacccttgctatcagc
tttctgagaaaactgcacctggaaaccctgaaagaaggaataacacatgtaaaaggcatt
gtacctgtgagtgtggcagggtatcttctcaatagtaaaaaaaaagaaatactggatctg
gaaatgcgcagggagattcgtattgtaattgaaggagatgcctcaatgcttccaagagaa
agcaggattctctgtgagcaataa
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