Desulfonema limicola: dnl_54920
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Entry
dnl_54920 CDS
T07101
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dli
Desulfonema limicola
Brite
KEGG Orthology (KO) [BR:
dli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dli03019
]
dnl_54920 (hrpA)
Enzymes [BR:
dli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
dnl_54920 (hrpA)
Messenger RNA biogenesis [BR:
dli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
dnl_54920 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
T2SSE
AAA_24
PhoH
SRP54
NACHT
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QTA83098
UniProt:
A0A975GJJ4
LinkDB
All DBs
Position
complement(5898333..5902334)
Genome browser
AA seq
1333 aa
AA seq
DB search
MLDNIKKIRKLESVCRKTMGADRYLFRRELNRLKNLILKVHDSKNKTGAVSDHVTGLIPG
LEQKIFDSVNKKKWRMENRPVIKYNPDLPIVDKKEDIIDAISKNQVIIISGETGSGKTTQ
IPKFCLEAGRGIDRSIGCTQPRRIAAITVARRIAEEIDEEPGQSVGYKIRFQDYTGDNSY
IKIMTDGILLAETQSDPWLNEYDTLIIDEAHERSLNIDFILGILKKLLYRRRDLKLIITS
ATIDTEKFSKAFDNAPIIEVSGRMFPVDVRYMVQGDGDEDQTHVDLAVKAVHRLQQESPY
GGDILIFMPTEQDIRETCEILEGRHYTGTNILPLFARLSAGDQSRVFSSMTGRKIIAATN
VAETSITIPGIKYVVDTGLARISEYSPRSGTTSLPVVPISKSSADQRMGRCGRVENGICI
RLYSQEDYENRPRFTLPEILRSNLAEVILRMISLKLGDVKAFPFIERPADKNIHDGFRLL
EELGAICRTKNTKSSMSYELTDMGKMMARLPVDPRISRILIEAAKLGCVEEIAVIASALT
IQDPRERPAEKQAQADQAHARYKDPDSDFITLFNIWKDYHETRRELKTTGKMRKYCKDNY
LSFKRMREWRDIHYQISSILEEQGVKNIIEKDQEQKVSDNGLFSPKYTAIHQAVLSGFLS
NIAMKKEKFFYKAARDREVMIFPGSGLFNKSGQWIVAAEMVETSRLFARIAANIDPLWLE
SIGKQHCSYSYSNPHWERNRGEVTALEQVSLFGLIIVSQRPVSFGPIDPRQASQIFIRSA
LVHGDIKQSLGFIAHNRKLMQEIQDMEDKIRRRDLLVSEDDLFAFYQQRLGDNIYDIRTL
KKLIKSRKTDNFLRMQKKDMLMTFPDQEELSLFPDKISLGNTVVPCDYQFDPGTPEDGVT
VNISSALAPSVPAQAADWLVPGLFKEKITFLIKGLPKEYRKQLVPVSNSVDVITDEMPRD
PQIHLLTALSRFVYHRFGVDIPASVWAVDDLPDHLKMRISIRGPKNEEIIAGRDTAILNK
GTVPELNPDYFESAKKAWEKTGIKAWDFPDLPETITLKGDQGEKWTAYPGLKPQKDTLEL
RLFSNRKQALESHKQGVLLLFTIVLAKEARMLKSHMTLPGNMIKTAGYFGGPKLIEKQLY
ESILKYYFYKNIRTEKEFKSHAEETAPHILEKGIQKLKFTVNVMEAYHQCRNTLYELENS
NRFNQGAVIFLSGLRDALSSLVPEHFAELYNNERMFHLERYIKTITLRAERGLINFEKDQ
GKSEDVKIHTMQLNQLINSLSPNVTDEKRKAVEDFFWLIEEYKVSLFAQELKTRVKVSPK
RLDKMFAEIQRMV
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgataatataaaaaaaattcgtaaacttgaatctgtttgcagaaaaacaatggga
gcagaccgttatttattcaggagggaactgaaccggttaaagaatttaatcttaaaagtt
catgattccaaaaataagactggagcagtctctgatcatgtaactggtcttataccgggg
cttgaacaaaagatttttgattctgtgaataaaaaaaaatggcgcatggaaaaccgccct
gtaattaaatataatcctgatcttcctattgttgataaaaaagaagatattattgacgca
atatccaaaaaccaggttattataatctcaggtgaaaccgggtctggaaaaaccacccag
attcctaaattctgccttgaagcaggacgcggaattgaccgcagtattggatgtacccag
cccagacgcattgctgccataactgttgccaggcgcatagctgaagaaatagatgaagaa
cctggtcagtctgtgggttataaaataagatttcaggattacactggtgataattcttat
atcaagatcatgactgacggtattcttcttgcggaaacccagtcagacccctggcttaat
gaatatgataccctgattattgacgaagctcatgaaagaagccttaatattgattttatt
cttgggatcttaaaaaaattattatacagacgcagggatttaaagcttattatcacctct
gccaccattgatactgagaaattttcaaaagcttttgacaatgccccgattatagaggtt
tcaggccggatgtttcctgtggatgtccgttatatggttcagggggacggggatgaagat
caaacccatgttgatctggcagtaaaagctgtacacaggttacagcaggaaagcccctat
ggaggtgatatcctgatttttatgccaacagaacaggatatccgtgaaacctgtgaaatc
cttgaaggcagacattatacaggaaccaatatcctgcctttgtttgcaagactttcagca
ggagaccagtccagagttttttcaagtatgacaggaagaaagatcatagctgccactaat
gtagctgaaacatccataaccataccagggataaagtatgtggtggatacaggacttgca
agaatttctgaatattcacccaggtcaggaacaacatctctgccagtagtacccatatca
aaaagcagtgcagaccagcgcatgggcaggtgcggccgcgtggaaaatggtatctgcatc
cgtctttattcccaggaagattacgaaaataggccccgttttaccctgcctgaaatcctc
cgttctaatttagccgaggttattttaagaatgatctctttgaaacttggggatgttaag
gcttttccttttattgaaagaccggcagataaaaatattcatgacgggttcaggcttctt
gaagagcttggtgccatatgccggactaaaaatacaaaatcttctatgtcttatgagctg
acagatatgggaaagatgatggcccggctgcccgtagatcccaggatttcacgcatactt
atagaggctgcaaaacttggatgtgttgaagaaattgcagttattgcctcagccttgacc
atacaggatccccgtgagcgcccggcagaaaaacaggcccaggcagatcaggctcatgcc
agatacaaagaccctgattctgattttataaccctttttaatatatggaaagattatcat
gaaacccgcagggaactaaaaacaaccgggaaaatgagaaaatactgcaaggataattac
ctttcatttaaacgtatgcgggaatggcgtgatattcactaccagatttcatccattctt
gaggaacagggggtaaaaaatatcatagaaaaagaccaggagcagaaagtttcagataat
ggattgttttctccaaaatacactgccattcatcaggctgttttaagcggatttctttcc
aatattgccatgaaaaaggagaaatttttttataaagcagcaagggacagagaggttatg
atatttcctggttccgggctttttaataaatcagggcagtggattgtagctgctgaaatg
gtggaaacctcaaggctttttgccaggattgcagcaaatattgatcctttatggctggaa
tccataggaaagcagcattgcagttattcttattcaaatcctcactgggaacgcaatcga
ggagaggtaacagctttggaacaagtcagcctgtttggtctgattattgtaagtcagaga
ccggtttcctttggcccgattgatcccaggcaggcttcccagatatttataagaagcgcc
ctggtgcatggagatataaagcaatccttgggatttatagctcataacaggaaacttatg
caggaaattcaggatatggaggataaaatcaggcggcgcgatcttcttgtaagtgaagat
gatttatttgctttttatcagcagaggctgggggacaatatctatgacatccgcacctta
aaaaagcttatcaaatccaggaaaactgataatttcctgagaatgcagaaaaaagatatg
ctcatgacttttccagaccaggaagaactttccctttttcctgataagatttccctggga
aacactgttgttccatgtgattatcaatttgatcctggaacccctgaagacggggttact
gttaatatctcttcagcccttgctccttctgtacctgcccaggcagcagactggcttgta
cctggactgttcaaggaaaaaataacctttttgattaaaggactgcctaaagaataccgc
aagcagcttgtacctgtatcaaacagcgttgatgtaattacagatgaaatgccaagggat
ccgcaaattcatctcttaaccgccttgagccggtttgtctatcacaggtttggggttgat
atccctgcttcagtatgggcagttgatgatctgccagaccatttgaagatgcgtatatcc
ataagaggacccaaaaatgaggagattattgcaggaagagacacagccatattaaacaag
ggaactgttcctgaattaaacccggattattttgaatctgcaaaaaaggcatgggagaaa
accggtattaaggcatgggatttccctgatcttcctgaaaccattaccttaaaaggagac
caaggggaaaagtggacagcttatccagggcttaaacctcaaaaagacacccttgaactc
cggcttttttcaaacagaaaacaagctcttgaatcccataaacaaggagttttgcttctt
tttaccatagttcttgcaaaagaagccagaatgctcaaaagccatatgaccctgcctggc
aatatgataaaaacagccggttattttggaggacctaaactgattgaaaaacaattatat
gaaagtattcttaaatattatttttataaaaacatccgtacagaaaaagaatttaaatct
catgcagaggaaacagcaccccatatcctggaaaaaggcatacagaaattaaaatttaca
gtcaatgtcatggaagcatatcaccaatgccgcaatactctttatgaactggaaaattca
aacaggtttaatcaaggagctgtcatatttttatcaggattaagagatgctctgtcaagc
ctggttcctgaacattttgcagaactttataataatgagcgtatgttccatttagagcgg
tatataaaaaccattaccttgagagcagagcggggattgataaattttgaaaaagaccag
ggtaaatcagaggatgttaaaatccacactatgcaattaaatcaattgataaactctctt
tcccctaatgtaacagacgaaaaacgcaaagcagtggaagattttttctggcttattgaa
gaatacaaggtttctctgtttgcacaggagcttaaaacccgggtaaaagtatccccaaaa
agacttgataagatgtttgcagaaatccagaggatggtgtaa
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