Desulfofustis limnaeus: DPPLL_04910
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Entry
DPPLL_04910 CDS
T09067
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dlm
Desulfofustis limnaeus
Pathway
dlm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dlm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DPPLL_04910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlm03021
]
DPPLL_04910 (rpoC)
03400 DNA repair and recombination proteins [BR:
dlm03400
]
DPPLL_04910 (rpoC)
Enzymes [BR:
dlm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DPPLL_04910 (rpoC)
Transcription machinery [BR:
dlm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DPPLL_04910 (rpoC)
DNA repair and recombination proteins [BR:
dlm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DPPLL_04910 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
DEK_C
Motif
Other DBs
NCBI-ProteinID:
BDD86126
UniProt:
A0ABM7W5C9
LinkDB
All DBs
Position
530153..534205
Genome browser
AA seq
1350 aa
AA seq
DB search
MEELFNFFQKPKAPTKFKAVKISLASPEKILDWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDFECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHIKLAAPVAHIWFLKSL
PSKIGAVLDMTLKQLERILYFEQYAVTQSDVDDLPVGTLLTEEKYRKALEDYPGRFQVGI
GAEAIRELLASQDLETLSKELRVEMSTTGSQTKRLKLGKRLQVIEAFIDSGNKPEWMVLE
VIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELDAPDIIIRNEKRMLQ
EAVDVLFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIYNKLERRGYVTTIKSARKMVEKGVKEVWDVLDEVVTEYP
VILNRAPTLHRLGMQAFEALLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQVEA
RVLMMSTNNILSPANGEPIIIPSQDIVLGLYYMTRDRVNVKGEGKSFADPQEARIAYDHG
QIDLQARIRVRMDGAMVDSTMGRILLGELLPEKVPFSEVNKVLSKKALAKLIDYTYRHAG
TKATVILTDRLKDIGYEYATRAGISICINDMKIPLAKEDMVEKAERDVLDVERQYADGLI
TSGEKYNKIVDIWSKATEDVANEMMSEIKVEYVRDRDNKVVETPSFNPVFIMADSGARGS
RDQIRQLAGMRGLMAKPSGEIIETPIKANFREGLGVLEYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQESTIVELDCQTLDGIVAEPLVDGGEIIVPIGERILGRVALDDVTDPFS
KEVLVSAGEQITEGKVEKIEAAGVDRVTIRSVLTCRSRRGVCAKCYGRDLGRGHMVNIGE
AIGVIAAQSIGEPGTQLTMRTFHIGGTASRAVEQAELKTQRGGTVGFKNLHFVENAEGAK
IVMNRNAEIVIQDELGRERERFKVNYGAQILVQEGAEVAPGSILADWDAYTIPIVAEVGG
TIKYGDVIEGVTMQEKVDPVTGKSSKVIIHSTGGQQLNPRVSVKNERGKTRKLPNSEIFA
RYSLPVGSIISVEEGDVIKPGTIVGKIPRETSKTKDITGGLPRVAELFEVRKPKEPAIIS
EIDGRVSFGKELKGKRRVIVTPEYGEPQEYLVPKSRHIIVHEGDYVQAGERLMEGTVVPN
DILRVLGVKDLAKFLVNEIQEVYRLQGVKINDKHIEVIVRQMLRRVHITASGDSKFMIGE
QVEWWVFEDERDKLFAEGKQPPVAEPLLLGVTKASLSTESFISAASFQETTKVLTNAAMA
GKMDELKGLKENVIMGRLISAGTGIHESAL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
gtggaagagttgttcaatttttttcaaaagccgaaagctccgaccaaattcaaagcggta
aagatctcgctcgcctcaccggagaagatacttgactggtcgcacggcgaggtgaaaaag
ccggagacgatcaattaccgaaccttcaagccggagcgcgacggcctattctgcgctaag
atcttcggtccggtcaaggatttcgaatgcaactgcggtaaatacaaacgcatgaaacat
cgcggcgtggtctgcgagaaatgcggggtcgaagtcatccagtcgaaggttcggcgggaa
cggctcggtcatatcaaactggctgccccggtggcccatatctggtttctcaaaagcctg
ccaagcaagatcggtgcggtattggatatgaccctcaagcagctggagcggattctttat
ttcgaacagtatgcggtcacccagtcagacgttgacgacttgccggtggggaccctgctg
accgaggaaaagtatcgcaaggctctggaggattatcccggccgcttccaggtcggcatc
ggcgccgaggccatacgtgagctgctggcctctcaggatctggagacgttgtccaaggag
ctgcgggttgaaatgtcgaccaccggctcccagaccaaacgtctgaagctgggcaagcgg
ttgcaggtaatcgaggccttcatcgattcgggcaataagccggaatggatggtgctggag
gtgattccggtactgcctcccgatctgcgtccactcgttccgctggagggcggtcggttt
gccacctctgacctcaacgatctgtatcgccgggttatcaatcgcaacaaccgcctcaag
cggttgctcgaacttgacgctccggacatcattatccgcaatgaaaaacggatgctccag
gaagcggttgacgtgctcttcgacaacggtcggcgagggcgggttatcaccggtgccaat
aagcgaccgctgaaatcgctggccgatatgctcaagggcaaacagggccggttccgtcaa
aacctgctcggcaagcgggtcgactattccggccgttcggtcatcgtggtcgggccgact
ctgcgcctgcatcagtgcggtttgccgaaaaaaatggccctggagttgttcaagcctttc
atctacaacaagctggagcggcgcggttacgtgacgaccatcaaaagcgcccgcaagatg
gtggagaaaggggtgaaggaagtctgggatgtgctggacgaggtggttaccgaatatccg
gtcatcctcaaccgtgccccgaccttgcatcgcctcggtatgcaggctttcgaagcgttg
ctaatcgaaggcaaggcgattcagcttcatccgctggtctgtgccgccttcaacgccgac
ttcgacggcgaccagatggcggtgcatgtcccgttgtcggtggaggctcaggttgaggct
cgggtcctgatgatgtccaccaacaatattctgtcgccggccaacggtgaaccgatcatt
attccgtcgcaggatatcgtactcggtctttattacatgacccgggaccgggtcaacgtc
aaaggcgagggcaaatcctttgccgatccccaggaggcccggattgcctacgatcatggc
cagatcgacttgcaggcccggatccgggtccgcatggacggggcgatggtcgactctacc
atggggcggattttgctcggcgaactgttgccggaaaaggtgcccttttccgaagtgaac
aaggtcctcagcaaaaaggccctggccaagctgatcgattacacctatcgtcatgcaggt
accaaggcgaccgttatcctcaccgatcgactcaaagatatcggttatgagtacgccacc
cgggccggtatttccatctgcatcaacgacatgaagatcccgctggccaaggaggacatg
gttgaaaaagcggaacgggatgtcctcgatgtcgagcgccaatatgctgacggcctcatt
acctcgggcgagaaatataacaagatcgtcgatatctggtcaaaggccaccgaggacgtg
gccaacgagatgatgagcgagatcaaggtggaatatgtccgggatcgtgacaacaaggtg
gtggagacgcccagcttcaatccggtctttatcatggccgactccggcgctaggggatcc
cgggaccagatccgccagttggctgggatgcgcggcctgatggcaaaaccgtccggcgaa
atcatcgagaccccgatcaaggccaatttccgcgagggactcggcgtcctggaatatttc
atttccactcacggtgcccgtaaaggtcttgccgataccgcactgaagaccgccaactcc
ggttacctgaccaggcgactggtggatgtggctcaggaatcgactattgtcgaactggat
tgccagacgttggacggcatcgtcgccgaaccgctagtcgacggcggtgagatcattgta
cccattggcgagaggattcttggtcgtgtggctttggacgacgtaacggatccgttctcc
aaggaggttctcgtttcggccggggaacagatcactgagggcaaggtggagaagatcgag
gccgccggtgtcgaccgggttacaattcgttccgtgctgacctgccgttcccgacgcggt
gtctgtgccaaatgctatggacgcgacctgggccgtggccacatggtcaatatcggcgag
gcgatcggggtcatcgccgcccagtctatcggtgaaccgggtactcagctgaccatgcgt
accttccatatcggtggtactgccagcagggcggtggaacaggccgaactgaagacgcaa
cgcggcggtaccgttggctttaagaacctccatttcgtcgaaaatgccgagggtgccaag
atcgtcatgaatcgcaatgccgagatcgtcatccaggatgagctggggcgggaacgagag
cgattcaaggtcaactacggtgcccagattctcgtgcaggagggtgccgaagtggccccc
ggatccatccttgccgactgggacgcctacaccatcccgattgttgccgaagttggaggt
accattaaatacggcgatgtcatcgagggcgtgaccatgcaggagaaggtcgacccggtg
accggtaaatcctccaaggtgatcatccattccactggagggcaacaactcaatccccgt
gtctctgtgaaaaacgaacgcggcaagacgaggaaactgcccaattccgaaatcttcgcc
cgctacagtctgccggtagggtcgattatctcggtggaggaaggtgacgtgattaaaccc
ggtaccatcgtcggtaagatcccgcgtgagacctccaagaccaaagatattaccggcggc
ttgccgcgagttgccgaattgttcgaagtacgcaagccgaaggagccggcgatcatttcc
gaaatcgatggtcgcgtcagcttcggcaaggaactcaaaggcaaacggcgggtcattgtc
acacccgaatatggggaaccgcaggaatacctagtaccgaaatcacggcatattatcgtc
cacgagggcgattatgtgcaggccggtgaacggttgatggaaggcacggtggtacccaac
gatattctgcgagtgctcggggtcaaagacctggccaagttcctggtgaacgagatccag
gaggtgtaccggttacaaggcgtcaagattaacgacaaacatatcgaggttatcgttcga
caaatgctgcgccgtgtccatatcaccgcctccggcgattccaagttcatgatcggtgag
caggtggaatggtgggtgttcgaagacgagcgcgacaaattgttcgccgaagggaaacaa
ccgcctgttgccgaaccgctgttactcggtgtcaccaaggcctcgttgtcgactgagagc
ttcatctcggcggcctccttccaggagaccaccaaggttctgaccaacgccgcgatggcc
ggtaaaatggatgaactgaaagggttgaaggagaacgtcatcatgggccgtctgatctcg
gcgggtaccggtatccatgagtcggcactgtga
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