Desulfofustis limnaeus: DPPLL_09810
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Entry
DPPLL_09810 CDS
T09067
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dlm
Desulfofustis limnaeus
Pathway
dlm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPPLL_09810 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlm03019
]
DPPLL_09810 (rhlE-2)
Enzymes [BR:
dlm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DPPLL_09810 (rhlE-2)
Messenger RNA biogenesis [BR:
dlm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DPPLL_09810 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Shikimate_DH
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
BDD86616
LinkDB
All DBs
Position
complement(1050594..1051850)
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AA seq
418 aa
AA seq
DB search
MSFTAFPLHHQLQANLQACGYTVPTPIQEAAIGPVLDGRDLLGLAQTGTGKTAAFVLPIL
QRLLERTGKPTPGPRALIISPTRELAEQTNDYINKLAARTGLRSAVFYGGVGKAGQIARI
RSGIDSVVACPGRLLDLVQEGALTLTNIRTLVLDEADHMFDRGFLPDIRRIIKLLPKQRQ
NLVFSATMPAEIRALVEAILSAPVTVQIDHTKAIATISHVFMRVAQQDKVALLRDVLNNE
GVRSAIVFTRTKHKAKNLARQLETSGLRATSLQGNLSQQKRQQALNGFKDGSYTILVATD
IASRGIDVSEISHIINFDMPETAETYTHRTGRTGRAQHNGEAISFIAEDNGHLAARLERS
LGAHLSYRHHSYETATTKPAGPAEQTPRQAKRPQKSAPRQRGKSASRRSRAASFDFGI
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcaccgcattccccttgcatcatcaactgcaggccaatttacaagcctgtggt
tacaccgtgccaacccccatccaagaggcggccatcggccctgttcttgacggccgcgac
ctgctgggcctggcccagaccggtaccggcaagactgccgctttcgtcctgccgatctta
caaagactgctggagcggacgggcaagccaacacccggaccacgggcattgatcatctct
ccgaccagggaactggccgagcagaccaacgactatatcaacaaactggcagctcgcacc
ggcttgcgcagtgctgtcttttatggtggcgtcggcaaggcagggcaaattgcccgcatc
agaagcggcatcgacagtgtcgtggcctgtcccggccgactgctcgacctcgttcaggaa
ggggcgctcaccctgaccaacatccgcacccttgtccttgacgaagcggatcatatgttt
gatcgcggtttcctgccggatatccggcggatcatcaaactgctgccaaaacagcgacag
aacctggtcttttccgccaccatgccggccgaaatccgcgctctggtggaggccatcctc
tctgcgccggtgaccgtccagatcgaccacaccaaggccattgccaccatctcccatgtg
ttcatgcgggtggcgcagcaggacaaggtggcgctgctgcgggacgtgctcaacaacgaa
ggggtacgatcggccattgtcttcacccgaaccaagcacaaagccaagaacctggctcgc
caactggaaacctccggccttcgggcgacctcattgcagggcaacctctcccagcagaaa
cggcagcaggcgttgaacggctttaaagacggttcctataccattctagtggccaccgat
atcgcttcccgcggtatcgacgtctcggagatctcgcatatcatcaacttcgacatgccg
gagaccgccgaaacttacacccatcgcaccggccggaccgggcgggcacagcataacggc
gaggccatcagcttcatcgccgaggacaacgggcacttggccgcacggttggaacgaagc
ctcggggcccatctgtcctaccggcaccactcgtatgagacggcgacgaccaaaccggcc
ggaccagcggagcagacaccccggcaggcaaagcggccgcagaaaagtgcgccgcgacag
cgcggcaagagcgcctcgcgacgaagccgcgcggcatcatttgattttggcatctga
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