Desulfofustis limnaeus: DPPLL_13100
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Entry
DPPLL_13100 CDS
T09067
Name
(GenBank) ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dlm
Desulfofustis limnaeus
Brite
KEGG Orthology (KO) [BR:
dlm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dlm03016
]
DPPLL_13100
Enzymes [BR:
dlm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DPPLL_13100
Transfer RNA biogenesis [BR:
dlm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DPPLL_13100
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BDD86945
LinkDB
All DBs
Position
complement(1401493..1403505)
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AA seq
670 aa
AA seq
DB search
MSFSFISSGKLIEYLDNGRFICGYVTDSQPKRVRLLNQNGREVNLPVSRIVHCSQASAPG
AADRESLIRLLQDTTEKRHTLMQNIDLQMLWELACEESTDTFDPHFLTELMFGQVADDDR
VSAFLRSVFKDKLFFKYREGKIQVHSPEKVEQLRLQQEREARKQEVVAQGSRLLKRIDQQ
ESGAEPFSETEDEVLTILQEYYLHGSEADRAEMAREILKEAGFTKPHDPYHLLIKAGVWP
RNVNLPLLKHNLPISFSTEARQQAEAILQYGSDSLFNDPARVDLTRLNTMTIDGATTLDF
DDALSIEEQKGNYLVGVHISDVAHYVRPGDPLFQEALQRGTSLYFPEGQIPMLPRHLSQG
VCSLIQGETRATLSHLILLSPEAEVLKTQIVPSIIRVARRLTYEDADTMIDSDPDLRLFN
MLRKKLQQRRIEAGALLLPFPDVNIYVDPQGKAHVSLGKTDTPARTIISEMMILANTEAA
RFVSDRMAPGLFRSQGRITKRFVQGDDDDLFLNTMQRKHLPRSELTTEARPHSGLGVGFY
TTVTSPIRRLLDLVMQHQINHLVRRRSTCFTEDMCKDFTSIISRTVATANNVKQQRHRYW
LLKYLEERKDSYMDALVIETGPKRVNLLLTDIIMDIDLPATRMPLPEPGNHVKVRPVKVD
PLDNSVRFDW
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttcatttattagttccggcaaactcatcgaatacctggacaacggcaggttc
atctgcggctatgtgacggacagccaaccgaaacgggttcgcctcctcaatcaaaacggc
cgcgaggtaaacctgccggtatcccgcatcgtccactgttcgcaggcctcggcgcccggc
gctgccgatcgcgaatcgttgatcagactgctgcaggacaccaccgaaaaacgacatacg
ttgatgcagaatatcgatctgcagatgctctgggagttggcctgcgaggaatcgaccgac
accttcgacccgcacttcctgacggaactgatgttcggccaggtggccgacgacgaccgg
gtatcggccttcctgcgctcggtattcaaggataagctcttcttcaaatatcgtgagggc
aagatccaggtacacagcccggaaaaagtggagcagctgcggttgcagcaggaacgggaa
gcgagaaaacaagaggttgtcgcccagggcagccggctgctcaagcgtatcgatcagcaa
gaaagcggcgcggaaccgttttccgagaccgaagacgaagtcctgacgatactgcaggaa
tactatctgcacgggtccgaggcggatcgggcggagatggcccgcgaaatcctcaaggaa
gcgggcttcaccaaaccgcacgatccctaccatctgctgatcaaggcgggcgtctggccc
cgtaacgtcaacctgccgttgctgaaacataatctgcccatctccttctccaccgaagcc
aggcaacaggccgaggcaattctgcagtacggcagcgattcgctgttcaacgacccggcc
cgcgtcgatctgacccggctcaacaccatgaccatcgacggggccaccactctcgatttc
gacgatgccttgagcatcgaagaacaaaaaggcaactacctggtcggtgtccatatctcg
gatgtggcccattacgtgcgccccggcgatccgctctttcaggaggcgctgcagcgcggg
acctcactctattttccggaaggtcagatcccgatgctgccgcgccacctgtcgcagggt
gtctgcagtctgattcagggggaaacgcgcgccaccctgtcgcatctgatcctgctctca
ccggaggcggaagttctcaagacccagatcgtcccctccatcatccgggtggcccggcgt
ctcacgtatgaggacgccgatacgatgatcgacagcgatccggatctacggctgttcaat
atgctgcgcaagaaattgcagcaacgacggatcgaagccggcgccctgctgctacccttc
cccgacgtcaacatctacgtggatccgcagggcaaggcacacgtatccctgggcaagacc
gacaccccggcacgcaccatcatctcggaaatgatgatcctggccaataccgaggccgcc
cgcttcgtctccgaccggatggcccccggcctgttccgctcccagggacgcatcaccaaa
cgctttgtccagggggacgacgacgacctgtttctcaacaccatgcagcgcaagcatctg
ccccgcagcgaactgaccaccgaggcgaggccgcacagcggactcggcgtcggcttctac
accacggtcacctcaccgatcaggcggctgctcgatctggtcatgcagcaccagatcaac
cacctggtacgccgccgcagcacttgttttaccgaggacatgtgcaaggatttcacctcg
atcatctcccgcacggtggccaccgccaacaacgtcaaacagcagcggcatcgctattgg
ctgctgaaatacctggaagagcgcaaggacagctacatggacgccctggtcatcgaaacc
gggccgaaacgggtcaacctgctgctcaccgatatcatcatggacatcgacctgccggcc
acccggatgccgctgccggaaccgggcaaccatgtcaaggtcagaccggtgaaggtcgac
ccgctcgacaacagcgtccgcttcgactggtga
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