Desulfofustis limnaeus: DPPLL_14720
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Entry
DPPLL_14720 CDS
T09067
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dlm
Desulfofustis limnaeus
Brite
KEGG Orthology (KO) [BR:
dlm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlm03019
]
DPPLL_14720
Enzymes [BR:
dlm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DPPLL_14720
Messenger RNA biogenesis [BR:
dlm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DPPLL_14720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
DEAD
OB_NTP_bind
HA2_C
AAA_22
WHD_HA2
nSTAND3
AAA_19
nSTAND_NTPase5
ResIII
NAT10_TcmA_helicase
AAA_25
NACHT
T2SSE
ABC_tran
SLFN-g3_helicase
SRP54
AAA_23
AAA_30
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
BDD87107
UniProt:
A0ABN6M6Q0
LinkDB
All DBs
Position
complement(1572610..1576377)
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AA seq
1255 aa
AA seq
DB search
MEFSYPADLPIAPFLPEIGALLAEHQVVVIAGETGSGKTTQLPKLCYQLAPDHPGMVGCT
QPRRIAATTVAQRVREELAGHGYLVGCKIRFHDQTSRQTRIKFMTDGVLLAETRRDPFLH
RYRVIIVDEAHERNLNIDFLLGYLRRLLKKRRDLQVVITSATIDTEAFAAHFDNAPVLRV
DGKIHPVEIVYLPPEREEEEASYVDQCVAAVDTICSSYPPGDMLVFLPTERDIRTCCETL
RGRLPQRAVLPLFGRLQASDQQRIFKPHHQPKIVVASNVAETSLTVPGIRYVVDSGLARI
STYNARSRTVNLPVTAISQANCDQRAGRCGRTGPGVCFRLFSEDDYRNRPAFAVPEIQRS
NLAEVILQMIALKLGDPVAFPFLDPPKPLAIREGYRMLRELGAIDDGGRLTEYGSIMAQL
PIDPVISRIIIEAEKNNCLTETVIIAAALALQDPRVRPADKEQAADQAHAAFADPRSDFI
MLLTIWRRCFAEMGSFSWSALKRFCSRHYLSFQRMREWIDLHEQLTRLLQTHHRFRFNTS
EASYEALHRSVLAGLFRQCARKKSGTVFHGIGNREIVLFPGSCAQRANADWIMAGSVIET
SRLFALTVAAIEPEWIEAAAREFCSYSWTNPRWQKRSGQVIGDETVSLYGLTLISGRQVN
FGSRDPKNQREARHIFIEHALVAGQISGSYPFLTRNRALLQQWREAEAKLRKRDVVIDDT
VVHDFYDDRLPPQVYDRRSLLKALKQGSQDHLLMTQQDILLRTPHERDLLDYPQKLRHGS
LELPLTYHFEPGSAHDGVTVLVPQEVLDALKPELFDWLVPGLLTEKTTFLIKGLPKRLRK
QLIPINEAVDRLLDSMEIGNGNYLRALAAAITKHYRVSVTPEDWPTDLPEHLRMRFCVVD
PAGREMRSGRDLRSLQQQGRHGAPDRPPAKLSARDQEAVERLRHQRFTTWDFATIRPRLD
LVDEQGRTVGGLYGALDILPDDQGVRVVYRPDPTDARRTNRDGAHRLLQLAFREQDRDVR
RYLKTTLTGPSTGWLAEIHGSSTGARHAIQRFVMHLLAPEKYDILTDRPAFDQTVKRLAT
LGYFASARRIIDLIMTLVRLRREITTHIATEEQAYPRSAGDFALLHSHLQLILPERFLDF
FTEPELGDAERFLKGLLIRVERARHNLVKDREKQQKFTPYLERGHALRAALDSAEPACHQ
LYRDYCRLVLEYGLTLFSPEIRSKTKVSEKILRQSWQELTAQGAGLEPAAPGNQP
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggagttttcctacccagcggacctgcccatcgccccatttcttccggaaatcggggcg
ctgcttgcagaacaccaggtggtcgtcatcgccggcgaaaccggatcaggcaagaccacc
cagttaccaaaactctgttaccaactcgctcccgaccaccccggcatggtgggatgcacc
cagccgcggcgcatcgccgccaccaccgtcgcgcaacgggtcagggaggaattggcaggg
cacggctatctggtggggtgtaaaatccgtttccatgaccagacaagcaggcagacccgc
ataaaattcatgaccgatggcgtcctgttggctgagacaagacgcgacccctttcttcat
cggtatcgcgtcattatcgtcgatgaggcccacgaacgcaacctcaacatcgattttctc
ctcggctatctgcgccgattgctgaagaaacgccgggatctgcaggtcgtcatcacctca
gcgaccattgacaccgaggcctttgccgcccatttcgacaacgccccggtgctgcgtgtc
gacggcaaaatccatccggtggagatcgtctatctccccccggagcgagaggaagaggag
gcgtcttacgtggatcagtgcgtggcggcggtggacaccatctgctcatcgtacccgccg
ggcgatatgctcgttttcctgccgaccgaaagagacatcagaacctgttgtgagaccctg
cgggggcgattgccgcaacgagcggtcctaccgctcttcggccgactgcaggccagcgac
cagcaacggatcttcaagccgcaccaccaaccgaagatcgtcgtagcctccaacgtcgcc
gaaacctcgctgacggtgcccggtatccgctacgtcgtcgactccggtctggcgcggatc
tccacctacaacgcccgctcacggaccgtcaacctgccggtcaccgccatttcccaggcg
aactgcgaccaacgggccggacggtgcggccgcaccgggccgggcgtctgtttccgtctt
ttcagcgaggatgactatcgtaatcgtccggcctttgccgttccggagatacaacgatcc
aacctggccgaggtcatcctccagatgattgccttgaaactgggcgacccggtggccttc
ccctttcttgacccacccaaaccactggccatccgggaaggctatcgaatgctccgggaa
ctaggggcgatcgacgatgggggacgattgaccgaatacggttcgatcatggcccagctg
cccatcgacccggtcatctcccgcatcatcatcgaggccgagaagaacaactgcctcacc
gagacggttatcatcgccgccgcgctcgctctccaggacccgcgggtccgaccggccgac
aaggaacaggcggcggatcaggcccatgccgcctttgccgacccccgttccgacttcatc
atgctgctcaccatctggcgacgctgttttgcagaaatgggcagcttctcctggtcggcg
ctgaaacggttctgctcccggcattacctctcttttcagcgaatgagggaatggatcgat
ctgcatgagcagctgaccaggctgttacagacccaccaccgctttcgcttcaacacgagc
gaggccagctacgaggccctgcatcgctcggtgctggccggacttttccgtcaatgtgca
cgaaaaaaaagcggcaccgttttccacgggatcggcaaccgggagatcgtgctctttccc
ggaagctgcgcccagcgcgccaacgcggactggatcatggccgggtctgttatcgagacg
tcaaggctcttcgccctgactgtcgccgctatcgagccggaatggatcgaggccgccgcc
cgcgaattctgttcgtattcctggaccaatccccgctggcagaagcgaagcggtcaggtc
atcggcgacgaaacggtgtctctctatggcctgacgctgatcagcggacgccaggtcaat
ttcggcagccgcgatccgaaaaaccagcgggaggcgcggcacattttcattgaacacgcg
ctcgtggccggccagatcagcggctcctatccctttctcacccgtaaccgggccttgtta
cagcagtggcgcgaggccgaggcaaagctgcgcaagcgggatgtggtcatcgacgatacg
gtcgtccacgatttctatgacgaccgtttaccgccccaggtctatgatcggcgttcgctg
ctcaaggccctgaaacaggggagccaggatcatctgttgatgacccagcaagacattttg
ctgcggaccccgcacgagcgtgaccttctcgactacccacagaaactgcggcacggctcg
ctcgaactcccgctcacctatcatttcgaaccgggcagcgcccacgacggagtgacggtg
ctggttccccaggaagtactggacgccttgaagccggagctgttcgactggttggtcccg
gggttgctgacggaaaagacgacgtttctcatcaagggcttgcccaagcgcttgcgcaag
caactgatcccgataaacgaggcggtcgatcgtttgctcgattccatggagatcggcaac
ggcaactatctgcgcgcgttggccgccgccatcacgaaacactatcgggtctcggtcaca
ccagaggactggccgacggacctgcccgagcacctgcgcatgcgtttttgcgttgtcgac
ccggccggcagggagatgcggtcgggccgggacctgcgctccctgcagcagcagggacga
cacggcgcgcccgatcgcccacccgcgaaactgtccgcccgggatcaagaggcggttgaa
cgcttgcgccaccagcgtttcaccacctgggacttcgcgaccatccggccccgtctcgac
ctcgtcgacgagcagggaagaaccgtcggcggcctctatggtgcactcgacatactgccg
gacgatcaaggggtgcgggtggtctatcgccctgatccgaccgacgcccggagaaccaac
cgggatggcgcccatcgcctgctgcagttggcttttcgagaacaggaccgggatgtccgg
cgctacctcaaaacgacgctgaccggcccgtctacaggctggctggcagagatccacggg
tcaagcaccggggcgcgacacgccatacaacgcttcgtcatgcaccttttggcccccgaa
aaatacgacatcctgacggaccgaccggcatttgatcagacggtgaagcggcttgccacg
ctgggctacttcgcttcagcgcgccggatcatcgacctgatcatgacgctcgtgcggttg
cgccgggaaatcacgacccacatcgccacggaggagcaagcctacccacgatcggccggt
gacttcgccctcctgcacagccatctgcagttgatcctcccagaaagattcctcgatttc
ttcaccgaaccggagttgggagatgcagagagattcttgaaaggattgttgatcagggtc
gaacgagcccgccataacctggtcaaggaccgggaaaaacagcagaagttcaccccgtac
ctggagcgtggccacgcccttcgcgctgctcttgattccgccgagccggcctgtcaccag
ctctatcgagactactgccggctggtcctggagtatggtctcaccctcttctcgccggaa
atcagaagcaaaaccaaagtgtcggaaaaaatcctgaggcaatcctggcaggagttgacg
gcacaaggcgccggcctcgaaccggcggcgccgggaaaccagccatga
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