Desulfofustis limnaeus: DPPLL_21500
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Entry
DPPLL_21500 CDS
T09067
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dlm
Desulfofustis limnaeus
Pathway
dlm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPPLL_21500 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlm03019
]
DPPLL_21500 (pnp)
03016 Transfer RNA biogenesis [BR:
dlm03016
]
DPPLL_21500 (pnp)
Enzymes [BR:
dlm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DPPLL_21500 (pnp)
Messenger RNA biogenesis [BR:
dlm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DPPLL_21500 (pnp)
Transfer RNA biogenesis [BR:
dlm03016
]
Prokaryotic type
tRNA degradation factors
DPPLL_21500 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
DUF3568
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BDD87785
LinkDB
All DBs
Position
complement(2337861..2339939)
Genome browser
AA seq
692 aa
AA seq
DB search
MMQTVEATVGNTTISIETGKLAKQASGSVVVRCGETVVLVTAVGEKRNKPEMGFLPLTIE
YQEKLASVGRIPGNYFRREIGRPSDREVLTCRIIDRPLRPLFADGYYAETQVIASVLSAD
QEHEPDMLALTGASCALVLSDIPFAGPVAGGRVGYIDGAFVMNPTTSELKRSAMDIVVAC
TDNAVVMVEGKADILPEEVVLDAIFFAFQQLQPLVEIQKQLQSTSGKAKRSVEKKEIDEV
LYQQIVERASVPMATVIATADKIERGRAYDELLAAIAAELDPEGLRAGEIGELLSKYRKQ
QMRAMIVDQGRRIDGRAFDQIRPISCEAGYLPRTHGSALFTRGETQALVTATLGSERDQQ
RVETLGGEENKRFMLHYNFPPFCVGEVRRMTGPSRRDIGHGTLAMRGLEAVLPAEADFPY
SVRVVSEVLESNGSSSMATVCGGSMALMDAGVPISAPVSGIAMGLIKEDDRVVVLSDILG
DEDHLGDMDFKVVGTAQGVSSLQMDIKIAGVDRAIMGQALAQAKSGRLHILGEMSKGIAE
ARKEISSYAPKFHSLHINPDKIRDLIGPGGKVIKELSADYDAKIEVEDSGLVKIFTVDGG
NFEELLYRIKTITAEPEIGAVYKGVVKTIKDFGAFVEILPGTDGLVHISELDKGRVNKVT
DVVKEGDEIEVKVLEIDGRGRIRLSRKALLQD
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaacagttgaagccaccgttggtaacaccaccatttcgatcgaaaccggtaaa
ctggcaaagcaagcctccggatccgtagtcgtacgatgcggcgagaccgtcgtattggtg
acggcggtcggtgaaaaacgaaacaagccggagatggggttcctgccgctgaccatcgag
taccaggaaaagctcgcctccgtcggccggattcccggcaactactttcgccgtgaaatc
ggccggccgagcgatcgcgaggtcctcacctgccggatcatcgatcggccgctgcggccc
ttgtttgccgacggctattacgccgagacccaggtcattgcctcggtgctttcagccgac
caggagcatgaacctgacatgctggccctgaccggagccagttgcgcgctggtcctgtcg
gatatcccctttgccgggccggtggccggtggtcgagtcggctatatcgacggggccttc
gtgatgaacccgaccacttcagagttgaagcgatcggcgatggatatcgtcgtcgcttgt
accgacaatgcggtggtaatggtggaaggcaaggccgatattctgcccgaagaggtcgtc
ctcgacgccatcttcttcgccttccagcaactgcagccgttggtggagattcaaaagcag
ctgcagtcgaccagcggcaaagcaaaacgctcggtggagaagaaagagatcgacgaggtc
ctctatcagcagattgtcgagcgggcctctgtgcctatggcaacggtcatcgccacggcc
gataagatcgagcgcggccgcgcctacgatgaactgctcgctgcaatcgctgcggaactc
gatcccgagggcctccgcgccggtgagatcggcgaactcctgtcgaaatatcgcaagcag
cagatgcgggcgatgatcgtcgaccagggacggcggatcgacggtcgcgccttcgatcaa
atccgccccatcagctgcgaagccggttatctgccacgaacccacggttcagccctgttt
acccgcggcgaaacccaggcgctggtcaccgccactctcggcagcgaacgtgatcagcaa
cgggtggagaccctgggcggcgaagagaacaagcggttcatgctccattataacttcccg
ccgttctgtgtcggcgaggtgcggcgcatgaccggtccgtcacggcgcgacatcggccac
ggaacgctggccatgcgcggcctcgaagcggtcttgccggcagaagcggacttcccctat
tccgtccgagtcgtttccgaggtccttgagtccaacggctcctcgtccatggccacggtc
tgcggcggcagcatggcgctgatggacgccggtgtgccgatcagcgcgccggtctcgggt
atcgccatggggctgatcaaggaggatgaccgggtggtagtgctttccgacatcctcggc
gacgaggatcacctgggcgacatggatttcaaggtggtcgggacggcgcaaggcgtttcc
tccctgcagatggatatcaagatcgccggcgtcgaccgggccatcatgggccaagcactg
gcccaggccaagagcggccggttgcatatcctcggggaaatgagcaagggcattgccgag
gcgcgcaaggagatttcttcctacgcgcccaagttccactcattgcatatcaaccccgac
aagatccgcgatctgatcggccccggcggcaaggttatcaaggagttgtccgccgactat
gacgccaagatcgaggtggaggacagcggcctggtcaagatattcaccgtagatggcggt
aacttcgaggaactgctgtaccggatcaagaccatcaccgccgaacctgaaatcggtgcc
gtatacaagggtgtggtcaaaacgatcaaggatttcggagcgtttgtcgagattctgccg
ggtacggacgggctcgttcacatctcggaactcgataagggacgggtcaataaagtaact
gatgtggtcaaggaaggcgacgagatcgaggtgaaggtgctcgagatcgacggtcgcggt
cgcatccgtttgagccgtaaggccctgctgcaggactga
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