Desulfofustis limnaeus: DPPLL_24410
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Entry
DPPLL_24410 CDS
T09067
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dlm
Desulfofustis limnaeus
Pathway
dlm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPPLL_24410 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlm03019
]
DPPLL_24410 (rnr)
03016 Transfer RNA biogenesis [BR:
dlm03016
]
DPPLL_24410 (rnr)
Enzymes [BR:
dlm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DPPLL_24410 (rnr)
Messenger RNA biogenesis [BR:
dlm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DPPLL_24410 (rnr)
Transfer RNA biogenesis [BR:
dlm03016
]
Prokaryotic type
tRNA degradation factors
DPPLL_24410 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
BDD88076
UniProt:
A0ABM7WAU7
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All DBs
Position
2688385..2690646
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AA seq
753 aa
AA seq
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MKTKFGQRHGRGKRFPDRSRRSRPAQLAAADIRLRNRILTALFFSSDPISSNDLAKKLGG
LPRSGRQDVERLLMGLERDGLVRQTGKKDFMLQARSPLAEAIIDMSPSGHAFARLLSSRH
GVSEEGREKDAYVPPARLSTALPGDRVLAFVTPSRRPGKKEAEVLHILQRANLRVAGFYH
EGGHCGVVHPDDSRFPFAIALAAPPPQPVEDGHAVLVSLLYGTDHTHPRGEIVEVLGDPG
QVTVQVRLIIEKFRLPHRFSDEAEQQARFPPPDPAADSRQDLRQTLHVTIDGADAKDFDD
AIAVEAIPDGYRLMVSIADVSAHVEVGSALDLEAYERGTSVYLPSTVVPMLPENLSNNLC
SLVPDADRLAVTVTIDFDQNGKRLRTSFARTIIRSKYRFTYDTVEQIVTTRDQVLRDRHE
RFVAELDRAAELAKILHAARQRRGAIGFTLPEAVVLFDDDGQVAAVKRSVRLFAHQIIEE
FMLAANEAVAETVVSTGADLLFRIHEPPEPEKINDFQTFARTLGLDLPDNPATPAWYNRL
IEQVEGTPYEYIINNLLLRTMQQARYSAEHTGHFGLASDHYTHFTSPIRRYPDLIVHRQL
CRLIQAGKPAASKGRPDRSSPTGQLPEDARHLSERERIAVAAEREMVDRLACRFMSRHLG
EIFSAVISGVSETVFFVELLDFAVSGIVSLSALTDDYYLLDQKRHRLVGDISGQTLQIGN
LVQVVLAAVDFDQNKLQFSLKQPRKRRKNATPH
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaaagttcggccagcgccacggtcgcggcaaacgtttcccggatcgctcccgc
cgttcccgaccggcgcagttggctgcggccgatatcaggctgcgcaacagaatccttacc
gccctctttttcagcagcgacccgatcagcagcaatgatctggcaaaaaagctcgggggg
ctcccccgctcgggcagacaggacgtggaacgattgctgatggggctcgaacgcgatgga
ctggttcgacaaaccggcaaaaaagactttatgcttcaggcccgcagcccactcgccgag
gcgatcatcgacatgagtccatcgggccacgcttttgccagattgctgtcatcccgacac
ggcgttagcgaggaggggcgcgagaaggatgcctatgtccctcctgcccggctatcaaca
gcgcttcccggcgaccgcgtcctggctttcgtgaccccgtcacgacgacccggcaaaaaa
gaggccgaggtgctgcacatcctgcagcgagccaaccttcgtgtggccggtttctatcac
gagggcggccactgtggcgtggtgcaccccgacgacagccgtttcccctttgccatcgcc
ctggccgcgccgccaccccagccggtggaagacggccacgccgtgctggtgtcgctgctc
tatggcactgaccatacccatccacgtggagagattgtcgaagtgctgggagatccgggt
caggtcacggtgcaggtgcgactgatcatcgaaaaattcaggctcccgcaccgcttcagc
gacgaagctgaacagcaagcccggtttccgcctcccgacccggccgccgattcgcgacaa
gacctgcgtcagaccctgcatgtgaccatcgacggcgccgatgccaaggatttcgacgac
gcgatagccgtcgaggcaatccccgacggctatcgactcatggtatccatcgccgatgtc
agtgcccatgtggaggtcggcagcgccctggatctggaagcttacgagcgggggacttca
gtctacctgccgtccacggtcgtcccgatgctaccggaaaatctctccaacaacctgtgc
agcctggtacccgacgctgaccgtctggccgtcaccgtcaccatcgatttcgatcagaac
ggcaagcggctccgaacttccttcgcccgcaccatcattcggagtaaataccggtttact
tatgataccgtcgagcagatcgtcaccacccgcgatcaggtgctgcgtgaccggcacgaa
aggttcgtggcagagttggaccgtgccgccgagttggccaagatactgcacgcggcccga
cagcgtcgcggcgccatcggcttcaccttgccggaagcggtcgtcctctttgacgatgat
gggcaggttgccgccgttaaacgatcggttcgcctgttcgcccatcagatcatcgaagaa
ttcatgctcgccgccaacgaagcggttgccgaaaccgtcgtcagcaccggggccgacctg
ctctttcgcatccacgaaccaccggagccggagaagatcaacgacttccagacctttgcc
agaaccctcggcctcgatttgccggacaacccggcaacaccggcctggtataacaggctg
atcgaacaggtcgaaggcacgccttacgagtacatcatcaacaatctgctgcttcgcacc
atgcagcaggctcgctacagcgccgagcacaccggccatttcggcctcgcctccgaccat
tacacccatttcacctcaccgatcaggcgctatcctgatctcatcgttcatcgtcagctc
tgcaggctgatacaagccggcaaaccggccgcaagcaagggccgaccggatcgatccagc
cccactggtcagctccccgaagacgctcgacacctctcggaacgagagcgaatcgcggtt
gccgccgagcgggagatggtcgatcgtctggcctgccgattcatgtcccgccacctcggt
gagatattctccgccgtcatttcgggagtcagcgaaaccgtttttttcgtcgaactgctt
gactttgcggtcagcggtatcgtatctttgtcggctttgacggacgattactatctcctc
gatcaaaaaaggcatcgtctcgtcggagacatcagcggtcaaacgctgcaaataggcaac
ctggttcaggtggtattggcagccgtcgatttcgaccagaacaagttacagttcagtctc
aaacaaccgcgaaagaggagaaagaacgcaactccgcactga
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