Dorea longicatena: K5I24_03405
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Entry
K5I24_03405 CDS
T08069
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dlo
Dorea longicatena
Pathway
dlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K5I24_03405 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlo03400
]
K5I24_03405 (mfd)
Enzymes [BR:
dlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K5I24_03405 (mfd)
DNA repair and recombination proteins [BR:
dlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K5I24_03405 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
AA_kinase
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
UOX54738
LinkDB
All DBs
Position
complement(706190..709570)
Genome browser
AA seq
1126 aa
AA seq
DB search
MQGLIGPLKELAEFEELCKNKKKDVGMIRVCGCVNSQKSHMMYALGDGCKYKVIACSSET
KAKQIYEEYRFLDSNTYLYPAKDFLFYQADIRSKELVKQRMEGIQAVLSGEPVTVVTSLD
GFMDHLAPKESIAEKVLKVQNDSVLKLDEMAEKLSVIGYDREVQVEGPGQFAVRGGILDI
YPLTEELPVRIELWGDEVDSIRTFDVESQRSIENLMDIVIYPAVEFPQNGEKGVSFLDYF
PPEDTILFLDEPVRLVERGQNIEDEFMEAQKKRLESGYDLEEEEAKIFPVTEILKKINCY
SSIGFYALGMKCKGLEVRESYEIQAKSVNPYNNSFEMLTQDLKRLKRNGYRVILLSGSRT
RAKRLAEDLRDYNLSSYYSEDLDREVKPGEIMTAYGYIAEGYEYPMLKFTVIAESDIFGK
RKKKKKRKTYEGRKIQSFSELKPGDYVVHENHGVGVYQGIEKIVVDKISKDYMKISYAQG
GNLYIPATQLDLIQKYASADAKKPKLNKLGTQEWNRTKTKVRGAVKEIARDLVKLYAARQ
EQDGYVYGEDTVWQREFEEMFPFEETEDQMMAIEAVKKDMESHKIMDRLVCGDVGFGKTE
VAIRAAFKAVQESKQVVYLVPTTILAQQHYRTFVQRMKDFPVRIDLMCRFRTPAQQKKTV
EDAKKGLVDIIIGTHRVLSEDMKFKDLGLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTA
TPIPRTLHMSLIGIRDMSVLEEAPNDRMPIQTYVMEYNDEMVREAIERECARQGQVYYVY
NRVEDIDEVAGHVQKLVPDLTVAYAHGQMREHELERIMYDFINGEIDVLVSTTIIETGLD
ISNANTMIIHDADRLGLSQLYQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIREF
TDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDLYCKMLNEAVKQLKGEMEEEETF
TTTMDLNVDAFIPASYIPNEYQKLDVYKRIAAIENREEMEDMTEELIDRFGDIPKKVEKL
LEVAALKAQAHQLYVTAVEQKGEVYTFTMYEKAKVHPERIPKLIEDFRGELTFKADGVQP
CFIYEKKRRNLKEKQTDALESTKNVLNGLKRLIGEEKSGIIDPLSK
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgcagggcttaatcgggccgttaaaagaactggcagagtttgaagaactctgcaagaat
aagaaaaaagatgtgggaatgatccgtgtgtgcggatgtgtgaattcccagaaatctcat
atgatgtatgcacttggcgatggctgtaaatataaagtcatcgcctgttccagtgagaca
aaagcaaaacaaatctatgaagaataccgtttcctggacagtaatacgtatctgtatccg
gcgaaagattttctcttctatcaggcagatatccgaagtaaagaactggtaaagcagaga
atggaaggaatccaggcagtgctttcgggtgaaccggtaacggttgtgacaagcctggac
ggcttcatggatcatctggcaccgaaggaaagtattgcggaaaaagtacttaaggtacaa
aatgatagcgttctcaaattggatgagatggcagagaagctttcggttataggttatgac
cgggaagtgcaggtggaaggacctggacagtttgcggtacgtggaggaatcctggatatc
tatccgctgacggaagaacttccggtgcgtatcgaactctggggagatgaggtggattcc
atccgtacgtttgatgtggagagccagcggtcgatcgaaaatctgatggatattgtaatc
tatccggcggtagaattcccacagaatggtgagaagggtgtctcgtttctggattatttt
ccaccggaggatacgatcctttttctggatgaaccggtacgtcttgtggagcgtggacag
aatattgaagatgaattcatggaagcacagaagaaacgtctggaaagcggatatgatttg
gaagaggaagaagcaaaaatctttccggtcactgagatcctgaaaaagatcaattgttac
agtagtatcggattctatgcactggggatgaaatgcaaaggactggaagtgagagagtct
tatgagatccaggcgaaaagtgtgaatccgtataataacagttttgaaatgctgacacag
gatctgaaacggttaaaaagaaatggatacagggtaattctgttgtcaggttccaggacc
cgtgcgaagcgtctggcggaagatttaagagattataatctgagcagttattacagtgaa
gatctggaccgggaagtgaagccgggagagatcatgacggcatacggatatatcgcagaa
ggttatgaatatccgatgctcaaattcactgtgatcgcagagtcggacattttcggcaaa
cggaaaaagaagaaaaagagaaagacatatgaaggccgtaagatccagagcttttcggaa
ctgaaaccgggagactatgtggtccatgagaatcatggtgtcggggtctatcaggggatc
gagaagatcgtcgtagacaagatttcgaaggattatatgaaaatttcgtatgcacagggc
ggaaatctttatatcccggcaacgcagctggatctgatccagaaatatgcaagtgccgat
gccaagaaaccgaaactgaacaagttgggaacgcaggaatggaaccggaccaagacaaag
gtgcgcggtgcggtaaaagagattgcaagggatctggtgaagctgtatgcggcgagacag
gaacaggatggttatgtctatggagaagatactgtctggcagcgggaattcgaagagatg
ttcccgtttgaagagacagaagaccagatgatggcgatcgaggctgtgaaaaaagatatg
gaaagccacaagatcatggaccgtctggtctgtggcgatgtcggattcggaaaaacagaa
gttgcgatccgtgcggcattcaaagcagtacaggagagtaaacaggtggtctatctggtt
ccgacaacaatccttgcacagcagcattaccggacgttcgtgcagcgtatgaaagacttt
ccggtgcggatcgatctgatgtgcagattccgtacgccggcgcagcagaagaagacagtc
gaggatgcgaaaaaggggctggtagatattatcatcggaacacaccgagtgttaagtgaa
gatatgaaattcaaggatctcgggcttctgatcattgatgaagagcagagattcggagta
cagcacaaagagaagatcaagaaattaaaggaaaatgtagatgtactgacgcttacggca
actccgatcccgagaacccttcatatgagcctgatcggaatccgtgacatgagtgtgctg
gaagaagcgccgaacgaccgtatgccgatccagacgtatgtcatggaatataacgatgag
atggtacgtgaggcaattgaacgggaatgcgcaagacagggacaggtatattatgtctac
aaccgcgtggaagatattgatgaagtggcaggacatgtgcagaaactggtgccggatctg
acggttgcctatgcacacggacagatgcgggaacacgaactggaacggattatgtatgat
ttcattaatggtgagattgatgtactggtatctacaacgatcatagagaccggactggat
atttccaatgcgaatacgatgatcatccacgatgcggatcgtctcggcctttcacagctt
tatcagctgcgtgggcgtgtcggacgctctaaccgcatggcatatgcattccttctatac
cggagagacaagatgttaaaagaagtggctgaaaagagactggcggccatccgcgagttt
acggatcttggttcgggattcaagatcgcaatgcgggatcttgagatccgcggagcaggc
aatcttctaggagcagaacagcatggacatatggaagcagtcggatatgacctttactgt
aagatgctgaacgaggcggtgaagcagctgaaaggcgagatggaagaagaggagacattt
acaacgacgatggatctgaatgtggatgcatttattccagcttcgtatattccgaatgaa
tatcagaaactggatgtttataaacggatcgctgcaatcgagaacagagaagagatggaa
gatatgacagaagaactgatcgaccgtttcggagatattccgaagaaagtagaaaagctt
ctggaagtagcggctctgaaggcgcaggcacatcagttgtatgtaacggcggtcgagcag
aaaggcgaggtttacacatttaccatgtatgaaaaagcaaaagtacatccggagcggatt
ccgaagctgattgaagattttcgtggcgagctgacgttcaaagcggatggggtgcagcca
tgttttatctatgagaagaagagaagaaatctgaaagagaagcagacagacgcattggaa
agtacaaaaaatgtgttaaatgggttgaaaagattgataggcgaagaaaaaagcggtata
attgacccattaagcaaataa
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integrated database retrieval system
