Dorea longicatena: K5I24_08870
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Entry
K5I24_08870 CDS
T08069
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dlo
Dorea longicatena
Brite
KEGG Orthology (KO) [BR:
dlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dlo03009
]
K5I24_08870 (rlmD)
Enzymes [BR:
dlo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K5I24_08870 (rlmD)
Ribosome biogenesis [BR:
dlo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K5I24_08870 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
PrmA
Cons_hypoth95
Methyltransf_11
Methyltransf_12
Methyltransf_4
N6_N4_Mtase
PCMT
Motif
Other DBs
NCBI-ProteinID:
UOX52692
LinkDB
All DBs
Position
complement(1848875..1850284)
Genome browser
AA seq
469 aa
AA seq
DB search
MMQKNEIVKVKIEDIGVGGEGIGKVDGYTLFIKDAIIGDVVEAKVMKAKKNYGYARLMNV
LTPSKDRVEEPVCPMARKCGGCQIQEMKYPAQLAFKEAKVRGNLERIGEVPAELLDQIMH
PAVGMDGEGMQPFRYRNKAQFPVGTDKDGRVIAGFYAGRTHSIIENTDCALGVEVNEEIL
NCILDFMEEFKIPAYDEVKHKGLVRHVLLRYGFKTDEIMVCLVINGKTIPHCHDLVGRLR
QIPGMTSITLSTNTAKTNVIMGDTIRLLWGQEFITDYIGEIKYQISPLSFYQVNPVQTEK
LYGLALDYAGLTGNDETVWDLYCGIGTISLFLAKKAKQVYGVEIVPQAIDDAKNNAKIND
ITNAEFYVGKAEEVLPEYYKEYEKTHNGEAAHADVIVVDPPRKGCEESLLQTIVDMQPEK
VVYVSCDSATLARDVKFLRANGYELKDVTPVDQFPHTVHVETVCLLSRK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagaagaatgaaattgtaaaggtaaaaatagaagatatcggagtcggaggagaa
ggcatcggtaaagtggatggatacacgctgtttatcaaagatgccatcatcggggatgtt
gtagaggcgaaagtaatgaaagccaagaagaattacggctatgcccgcctgatgaatgtc
ctgactccatcaaaggaccgtgtggaagagccggtctgtccgatggcaagaaaatgcggc
ggctgtcagattcaggagatgaagtatccggcacagcttgcatttaaagaagcaaaggta
cgcggcaatctggagcggatcggagaagttccggcggaacttctggatcagatcatgcac
ccggctgtcggcatggacggagaaggaatgcagccgttccgctaccggaataaggcgcag
ttcccggtcggaacggacaaagacggcagagtgatcgccggattctatgccggaagaaca
cacagcattatcgagaatacagattgtgcactcggcgtggaagtgaatgaagaaatcctg
aactgtatcctagatttcatggaagaattcaaaattccggcatacgatgaagtgaagcat
aaaggactggtacgacatgtactgctccgttacggattcaagacagatgagatcatggta
tgtctggtcatcaatggaaagaccattccgcactgccacgatctggtaggacgtctccgt
cagattccgggtatgacaagcatcacactcagcacgaatacagcgaagactaatgtgatc
atgggtgatacgatccgccttctgtggggacaggagttcatcacagactatattggcgag
atcaagtaccagatatctccgctgtcattctaccaggtgaatccggtccagacagagaag
ttatatggactggcattagactatgcaggactgaccggtaatgatgagacggtatgggat
ctgtactgcggaatcggaaccatttccctgttccttgcaaagaaagcaaagcaggtatat
ggagtggagatcgtaccgcaggccattgacgatgcgaagaataatgcaaagattaatgac
attacgaatgcggaattctatgtaggcaaggcagaagaagttctgccagaatattataaa
gaatatgaaaagacacataacggagaggcggcgcacgcagatgtgatcgtggtcgatccg
ccgagaaagggctgtgaggaatccctgcttcagacgatcgtggatatgcagccggagaaa
gtcgtgtatgtgagctgcgacagtgcaacgcttgcgcgggatgtgaagttcttaagagcg
aatgggtatgagcttaaggatgtgacacctgtggatcagtttccgcatacggtgcatgtg
gagactgtgtgcttattatcacggaaatag
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