KEGG   Dorea longicatena: K5I24_16295
Entry
K5I24_16295       CDS       T08069                                 
Name
(GenBank) PolC-type DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
dlo  Dorea longicatena
Pathway
dlo03030  DNA replication
dlo03430  Mismatch repair
dlo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    K5I24_16295
   03430 Mismatch repair
    K5I24_16295
   03440 Homologous recombination
    K5I24_16295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dlo03032]
    K5I24_16295
   03400 DNA repair and recombination proteins [BR:dlo03400]
    K5I24_16295
Enzymes [BR:dlo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     K5I24_16295
DNA replication proteins [BR:dlo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     K5I24_16295
DNA repair and recombination proteins [BR:dlo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     K5I24_16295
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NI HHH_6 DNA_pol3_a_NII tRNA_anti-codon RNase_H_2 DEDDh_C DZR
Other DBs
NCBI-ProteinID: UOX54021
LinkDB
Position
3347522..3352063
AA seq 1513 aa
MSKPFFEVFPTLKVKDDIQMMFQGVEVTKVSTNSTRDFIRVSLYSRHLIQKKHIYEVERL
LKQQLFARSHIQVSVKEQYDLSEQYTPENLMNEYYDSFLMELDQRSVVERNMLQNASYEF
ENGNILCLTLTDTIVAQGKKDSLSTYLSDVFEERFHRPVEIRVLYEKAKDSKLKYNEAKL
EQEIEAIREQSQAVKAKKAQELEQKEEKKDEKTKAKSNSAGESGNNTKSGGRSSGGFKKG
GSFGKGGYSFVRKATDDPNLIYGRDFDDETIELKNVLGEMGEITIRGKVISMETREIRNE
KTIIMFAVTDFTDSIMVKMFVRNDQLADILGDIKNGAFLKLKGVTTVDRFDSELNIQSVV
GIKKISDFTESRVDTAPEKRVELHCHTKMSDMDAVTDVTTLLKQAHDWGHPAMAITDHGV
VQAFTDANHYIESLDKDDPFKVIYGVEGYLVDDLTDVAVNEKGQPLDDTYVVFDLETTGF
SPIKDKIIEIGAVKVEHGEITDKFSTFVNPKVPIPFQITQLTSITDQMVIGAPDIETVLP
QFLEFIGDAALVAHNASFDVSFIEQNCRYQDIQPDFTSVDTVAMARILLPTLSKYKLNVV
ANALHISLENHHRAVDDAGATAEIFVKFIEMLKDRGIYDLAKLNQFGENNADAVRKLPSY
HVIILALNEVGRVNLYTLISMSHLKYYARRPRIPKSELSKYREGLLVGSACEAGELYQAI
LNDKSEERIAKIANFYDYLEIQPLGNNQFMIESPKITKVQNEEDLKEINRKIVALGERFN
KPVVGTCDVHFMNPEDEVYRRIIMAGKGFGDADNQPPLYLRTTDEMLEEFEYLGSAKARE
IVIENPVKIAEMVEKITPVRPDKCPPVIPDSDKMLRDICYNKAHSMYGENLPEIVTERLE
RELNSIISNGFAVMYIIAQKLVWKSVEDGYLVGSRGSVGSSFVATMAGITEVNPLSPHYY
CKKCHYSDFDSEEVRKFAGGCGWDMPDRVCPVCGEKLIKDGFDIPFETFLGFKGNKEPDI
DLNFSGDYQSNAHKYTEVIFGAGQTFRAGTVGTLADKTAFGYVKNYYEEHGQGKRKCEID
RIVQGCTGIRRSTGQHPGGIIVLPLGEEINSFTPVQHPANDMTTDIVTTHFDYHSIDHNL
LKLDILGHDDPTMIKTLEEYISSPAMDNEYNETDNRFDATKIPLDDPGVISLFHDTSALG
IKPDDIGGCPVGCLGIPEFGTDFVIQMVVDTKPNTISDLIRISGLSHGTDVWLNNAQELI
RSGKATISTAICTRDDIMTYLINKGMDSEESFTIMERVRKGTVAKGKCKEWPEFKKDMAE
HNVPDWYVWSCEQIKYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRADAFSYEI
MCQGKEKLQYYIDDYNRRSATLSKKEQDTMKDMKIVQEMYARGFEFEPLDIYKAQATKFL
IVNGKLMPPLSSIDGMGEKAAEAVAEASKDGTYLSLDDFRQRTKASKTVIDTMVELGILA
DLPASNQLSLFDF
NT seq 4542 nt   +upstreamnt  +downstreamnt
atgagtaaaccgttttttgaggtatttccgacattaaaagtaaaagatgatatacagatg
atgtttcagggtgtggaagtgacgaaagtttctaccaattcaacaagggattttatccgt
gtcagcctttacagcagacatctgatccagaaaaaacatatttacgaagtagaacgcctg
ttaaaacagcagctgtttgccagaagtcatatccaggtgtcggtaaaagagcagtatgat
ctttcagaacagtatacaccggaaaatctgatgaatgaatattatgacagcttcctgatg
gaactggatcaaagaagcgtagtagagcggaatatgctgcagaatgcaagttatgaattt
gaaaacggaaatatcctctgtctgacattgactgataccattgttgcacagggaaaaaag
gattcgctatctacatatctttcagatgtgtttgaagaacggtttcacaggcctgtggag
atccgtgttctttatgaaaaagcaaaagacagcaagctgaaatacaacgaggcgaaatta
gagcaggaaatcgaagcaatcagagaacagtcgcaggccgtaaaagcaaagaaagcacag
gaactggaacaaaaagaagagaagaaagacgaaaagaccaaagcaaaaagcaactcagca
ggagaaagcgggaacaataccaaaagtggcggaagaagttcaggtggatttaagaagggc
ggctcattcggaaaaggtggatattcctttgtacgtaaagctaccgatgatccaaacctt
atctacggacgtgattttgacgatgagacgatagaacttaagaatgtcctgggagagatg
ggagagattaccatccgcggaaaagtcatcagcatggagaccagagagatacgtaacgag
aagacgatcattatgtttgcagttacggattttacggattctattatggtgaaaatgttt
gtgcggaatgatcagctggcagatatcctgggggatattaagaatggcgcatttctgaaa
ttaaaaggtgtgacaacggttgaccgttttgattcggaactgaatatccagtcggtagtc
ggaatcaaaaagatcagtgattttacagaatccagagtggatacggcaccggaaaagcgt
gtggagcttcactgccatacaaagatgagcgatatggatgcggtaactgatgtaacaaca
ttgctgaaacaggcgcatgactgggggcatccggcgatggcgattacagatcacggtgtc
gttcaggcgtttacagatgcgaaccattatattgagtcgctggataaggatgatccgttt
aaagtgatttacggtgtggaaggctacctggtggacgacctgactgatgtggcagtgaat
gaaaagggacagccactggatgatacttatgtagtatttgaccttgagacgacagggttc
agtccaattaaggataagattattgagattggtgcggtgaaggtagaacatggagagatt
actgataagttcagcacattcgttaatccgaaagtaccgattccatttcagatcacacag
cttaccagtattacagatcagatggttataggagcaccggatatcgagacagttcttcca
caattcctggaatttatcggtgatgcggcactggtcgcacacaatgcatcctttgatgta
agctttattgaacaaaattgcagatatcaggatatccagccggatttcacatcggtggac
accgtggcgatggcgcgtattcttctgccaacactttcaaagtacaagctgaatgtagtg
gcgaatgcactgcatatttcgctggaaaatcatcacagggctgttgatgatgccggggca
acagcagagatatttgtgaaatttatagaaatgttaaaagacagggggatttatgacctg
gcaaaactgaaccagttcggcgaaaataatgcggatgctgtccgcaagcttccatcatac
catgtgatcattctggcactgaatgaagtgggacgcgtgaatctgtatacgctgatctcg
atgtcacatctgaaatattatgcgagaagaccgagaattccaaagagtgaactgtcgaaa
tacagagaaggacttctggtgggaagtgcctgtgaggcaggagaactttatcaggcaata
ctgaatgacaaatcagaagaacgcattgcaaagatcgccaacttttatgattatctggag
attcagccgcttggaaacaaccagtttatgattgaaagcccgaagatcacgaaggtacag
aatgaggaagacttaaaagaaatcaacaggaagatcgtcgcacttggtgaacggttcaat
aagccggttgtcggaacttgtgacgtgcatttcatgaatccggaagatgaggtatacaga
agaatcatcatggcaggaaagggctttggtgatgcggacaatcagccgccgctgtatctt
aggaccacggatgagatgctggaagaattcgaatatctggggtctgcaaaggcaagagag
attgtcatcgagaatccggtgaagatcgcggagatggtcgaaaagatcacgccggtgcgt
ccggacaagtgtccgccggttatcccggattcggacaagatgctccgtgatatctgttat
aataaagcacattccatgtacggagagaatcttccggagatcgttaccgagcgtctggag
cgagaactgaattcaatcatatccaatggttttgccgttatgtatattattgcacagaaa
ctggtatggaaatcagtggaagacggatatctggtaggttcacgtggttccgtaggatct
tcttttgtagcgaccatggcgggaatcacagaggttaacccattaagtccgcactattac
tgtaagaaatgtcattacagtgattttgattcggaagaagtcaggaaatttgccggaggc
tgcggatgggatatgccggaccgtgtatgtccggtatgtggagagaagcttataaaagat
ggatttgatattccgttcgagactttccttggattcaagggaaataaagagccggatatt
gacctgaacttctcgggagattatcagagtaatgcgcataagtatacagaggttatcttt
ggtgcgggtcagacattccgtgccggaacggtaggtacactggcggacaagaccgcattc
ggttatgtaaagaattattacgaagaacatggacagggtaaaagaaaatgtgagattgac
cgtatcgtacaggggtgtacgggaatccgccgaagtaccggacagcatccgggaggaatc
attgtacttccgcttggcgaagagatcaactcttttacaccggtacagcatccggcgaat
gatatgacgacggatatcgtcaccacacatttcgattaccattcgatagaccacaacctg
ttaaagcttgatattctcggacatgatgatccgactatgatcaagacactggaggaatat
atcagttccccggcgatggacaacgaatacaatgagacggataaccgttttgatgctacg
aagatcccactggatgatccgggggtaatttctttgtttcatgatacatcggcacttggt
atcaagccggatgatatcggcggatgtccggtcggatgccttggaatcccggaatttgga
actgatttcgttatccagatggtagtggatacaaagccgaatacaatttcggatctgatc
cgtatctccggtctgtcacatggaacggacgtgtggctgaataatgcacaggaactgatc
cggagcggaaaggcaaccatttccacggcaatctgtacccgtgatgatatcatgacctat
ctgatcaacaaggggatggacagtgaggaatcatttaccattatggagcgtgtccgtaag
ggaaccgttgcaaaaggaaaatgtaaagaatggccggagttcaaaaaagacatggcagaa
cacaatgtacccgactggtatgtctggtcctgtgaacagatcaaatacatgttcccgaaa
gcgcatgcggcagcatacgttatgatggcataccgtatcgcatactgtaagatcaactat
ccactggcatattatggggcgtattttggaatccgtgcagatgcattttcttacgagatc
atgtgccaggggaaggaaaagcttcagtactatattgatgattacaaccgccgttctgcg
acactcagtaaaaaagaacaggatacgatgaaggatatgaagattgtgcaggagatgtat
gcaagaggattcgaatttgagccgcttgatatctacaaagcacaggcgacaaagttcctg
atcgtaaacggcaagctgatgccgccactttcgagtatcgacggtatgggagaaaaagct
gccgaggcagttgcagaagcatctaaagacggaacttatctgtcactggatgacttcaga
cagagaacaaaagcaagtaagaccgttattgacacgatggtagagcttgggatccttgca
gatcttccggcatcgaaccagctgtcattgtttgatttttag

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