Diaphorobacter limosus: P4826_17575
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Entry
P4826_17575 CDS
T10112
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dls Diaphorobacter limosus
Pathway
dls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P4826_17575 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dls03019
]
P4826_17575 (pnp)
03016 Transfer RNA biogenesis [BR:
dls03016
]
P4826_17575 (pnp)
Enzymes [BR:
dls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
P4826_17575 (pnp)
Messenger RNA biogenesis [BR:
dls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P4826_17575 (pnp)
Transfer RNA biogenesis [BR:
dls03016
]
Prokaryotic type
tRNA degradation factors
P4826_17575 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
DUF5813
KH-I_KHDC4-BBP
KH_KhpA-B
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WOO32175
UniProt:
A0ABZ0J1T5
LinkDB
All DBs
Position
3660633..3662861
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AA seq
742 aa
AA seq
DB search
MTMFNKVTKTFQWGEHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTI
SLNPEVDADIAAMIATSAALAVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQMDLV
VAGTEAAVLMVESEAQQLPEDVMLGAVVYGHEQSQTAINAIHELVRDAGKPVWDWKAEAK
DEALIAKVGELAEEKLRAAYQNRNKQLRTQACREAYAATKAALTEQGVAFDGVKVDNMLF
DIEARIVRGQILAGEPRIDGRDTRTVRAIEIRSSVLPRTHGSALFTRGETQALVVSTLGT
ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVACLPSK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEENKFAVL
TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARMHILAKMQ
EAMGEAKAEISSFAPKLFTMKINPEKIRDVIGKGGATIRALCDETGCQINIEEDGTITIA
ATEAAKADEAKRRIEEITAEVEIGKVYEGPITKILDFGALVNVLPGKDGLLHISQIAHER
VEKVTDYLQEGQIVRVKALEADDKGRIKLSMKALIERPAGMPEREPREPREYRERAPRAP
RENREPREPRAERAEQDQPTQE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgttcaacaaagtcaccaagaccttccagtggggcgagcacaccgtgaccatg
gaaaccggcgaaatcgcgcgccaggcttccggcgccgtgctggtcaacatcgacgacacc
gtggtgctggccaccgtggtcgcatccaagaacgccaagcccggccaggacttcttcccg
ctgactgtcgattacatcgagaagacctacgccgctggcaagatccccggcagcttcttc
aagcgcgaagccaagccgtccgagctggagacgctgacttcccgcctgatcgaccgcccg
atccgcccgctgttccccgaaggcttctacaacgaagtccacgtggtcatccacaccatc
tcgctcaaccccgaggtggacgccgacatcgccgccatgatcgccaccagcgccgcgctg
gctgtgtcgggcatcccgttcaacggcccgattggcgccgcgcgcgtgggctatgtcaac
ggtgaatatgtgctcaaccccggccagacggcgcgcaagagcagccagatggacctggtc
gtcgccggcaccgaggccgccgtgctgatggtcgagtccgaagcgcagcagctgcccgaa
gacgtgatgctgggcgccgtggtctatggccacgagcaaagccagaccgccatcaacgcc
atccacgagctggtgcgtgacgccggcaagccggtgtgggactggaaggccgaggccaag
gacgaggccctgatcgccaaggtgggcgagctggccgaagaaaaactgcgcgccgcctac
caaaaccgcaacaagcagctgcgcacccaggcctgccgcgaggcctacgccgccaccaag
gcggcgctgaccgagcagggcgtggcgtttgacggcgtcaaggtcgacaacatgctgttc
gacatcgaagcgcgcatcgtgcgtggccagattctggctggcgagccgcgcatcgacggc
cgcgacacgcgcaccgtgcgtgctatcgaaatccgcagcagcgtgctgccgcgcacccac
ggctcggccctgttcacgcgcggcgaaacgcaggcgctggtggtctcgacgctcggcacc
gagcgcgacgcgcagcgcattgacgcactggctggcgagttcgaagaccgcttcctgttc
cactacaacatgcctccctttgccaccggcgaagtgggtcgcatgggctcgaccaagcgc
cgcgaagtcggccacggccgcctggccaagcgcgccctggtggcctgtctgccgagcaag
gaagagttcccctacaccatccgcgtggtgtccgagatcaccgagtccaacggctcgtct
tccatggcctcggtctgcggcggctgcctgtcgatgatggacgccggcgtgcccatgaag
gcgcatgtggccggcatcgccatgggcctcatcaaagaggaaaacaagttcgccgtgctg
accgacatcctgggcgatgaggatcacctgggcgacatggacttcaaggtggccggtacc
accgccggtatcacggcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaagtcgccctggcccaggccaaggaagcgcgcatgcacatcctggccaagatgcag
gaagccatgggcgaggccaaggccgagatcagcagctttgcgcccaagctgttcaccatg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgccaccatccgcgcg
ctgtgcgacgaaacgggctgccagatcaacatcgaggaagacggcaccatcaccatcgct
gccaccgaggccgccaaggccgacgaggccaagcgccgcatcgaggagatcaccgccgaa
gttgaaatcggcaaggtctacgaaggcccgatcaccaagatcctggacttcggcgccctg
gtcaacgtgctgccgggcaaggatggcctgctgcacatcagccagatcgcgcacgagcgc
gtggaaaaggtcaccgactacctgcaggaaggccagatcgtgcgcgtcaaggcgctggag
gccgacgacaagggccgcatcaagctgtcgatgaaggcactgattgagcgccccgccggc
atgcccgagcgcgaaccgcgtgagccgcgcgagtaccgcgagcgtgccccgcgcgcgccg
cgtgaaaaccgcgagccgcgtgagcctcgcgccgagcgtgccgagcaggatcagccgacg
caggagtaa
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