Diaphorobacter limosus: P4826_19240
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Entry
P4826_19240 CDS
T10112
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dls Diaphorobacter limosus
Pathway
dls03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P4826_19240 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dls03400
]
P4826_19240 (mfd)
Enzymes [BR:
dls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P4826_19240 (mfd)
DNA repair and recombination proteins [BR:
dls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P4826_19240 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
WOO32483
LinkDB
All DBs
Position
complement(3993026..3996499)
Genome browser
AA seq
1157 aa
AA seq
DB search
MQLPKLSPGKRFTLPRPVGSADALLLARLGEREKAAGRVTAIVTADAADAQRLIDEMAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRISQGEADVVLVPATTALYRLAPPA
FLAGYTFHFKVKQKLDEAKLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMGSLQPYR
VDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAARGKFRQRWRELLEGDPTR
SRIYKDMGNGVATAGIEYYLPLFFDDTATVFDYLGEQATVVLHGDLETAFQRFWQDTRER
YRLIQGDPDHPTLPPEALFLSAEQFYGQAKPHAQLSLRPGVEDVQDNASFQKLPDLSVVR
GADDPLARLQKHIASSAHRVLLLAESDGRRESLLDFLRASGLNPPAFDSLAEFQQTLAER
VGIATAALATGFAWVEDGLDLVTETELFATGSTTRRRKKQEQASDVEALIKDLSELKMGD
PVVHSQHGIGRYRGLMHMDMGQKNPDGSPALQEFLHLEYADKAMLYVPVSQLQLIGRYTG
VSADEAPLHKLGSGQWEKARRKAASQVRDAAAELLNIYARRAAREGHAFRYSPQDYEQFA
NDFGFEETADQNAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVTGGKQVAF
LAPTTLLAEQHFRTLSDRFAKWPVKVAEVSRFRSGKEISAAVKGIADGTVDIVVGTHKLL
SESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMALEGLRDLS
VIATAPQRRLAIKTFVRNEGQGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLEEVLP
EARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLA
QLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLDAIQQMEELGSGFYLAMHDLEIRG
AGEVLGENQSGNMLEVGFQLYNEMLAEAVRCLKAGKEPDLLAPMQAATDINLHAPALLPD
DYCSDVHLRLSFYKKLATARTSDQIDGLLEEIVDRFGKLPAQAQTLIDVHRLRVLSQPYG
VVKVDAAPGVITVTFKPQPPIDPMNIIQLIQKNKHIKLAGNEKLRIERELPEPAQRAQLV
RDVLRSLGQPIAAPVAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgcccaaactctcccccggaaaacgcttcaccctgccccgccccgtgggtagc
gccgacgccctgttgctggcccgcctgggcgaacgcgaaaaggccgccggccgcgtcacc
gccatcgtcacggcggacgccgccgatgcccagcgcctgatcgatgaaatggcgtttttt
gcgccagagctgcgctgcgcgctgtttcccgactgggaaaccctgccctacgacagcttc
tcgccgcaccaggacttgatcagcgagcgcctggcgacgctgtggcgcatatcccaaggc
gaggccgacgtggtactggtgcccgccaccacggcgctgtaccgcctggcgccgccggcc
ttcctggccggctacaccttccacttcaaggtcaagcaaaagctggacgaagccaaactg
cgcgcgcaactgacgctggccggctaccagcatgtatctcaagtcgtgggccatggcgaa
tacgcggtgcgcggcgggctcattgacctgttccccatgggctcgctgcagccctatcgc
gtggatctgttcgacgacgagatcgactccatccgcaccttcgaccccgacagccagcgc
agcctctaccccgtgcccgaggtgcgcctgctgcccgggcgcgaatttcccatggacgag
gcggcgcggggcaagttccgccagcgctggcgcgagctgctggagggcgaccccacgcgc
agccgcatctacaaggacatgggcaacggcgtggccaccgccggtatcgagtactacctg
ccgctgttcttcgacgacacggccacggtgttcgactaccttggcgaacaggccacggtg
gtgctgcacggcgacctggagacggcctttcagcgcttctggcaggacacgcgcgagcgc
taccgcctgatccagggcgacccggaccaccccacgctgccgcccgaggcgctgttcctg
tccgccgagcagttctacggccaggccaagccgcatgcccagctgtcgctgcgcccgggt
gtggaggacgtgcaggacaacgccagcttccagaagctgcccgacctgtccgtggtgcgc
ggcgccgatgacccgctcgcccggctgcaaaaacatatagcatccagcgcacaccgggtc
ttgcttttggccgaatccgatggcagacgcgagagcctgctggactttctgcgcgcatcg
ggcctgaaccctccggccttcgactcgctggccgaatttcagcaaacgctcgccgagcgc
gtgggcattgccacggcggcgctggccaccggttttgcctgggtcgaagacggcctggat
ctcgtcaccgagaccgagctgttcgccaccggcagcacgacgcgccggcgcaagaagcag
gagcaggccagcgacgtagaggcgctgatcaaggatctgtccgagctcaagatgggcgac
ccggtggtccacagccagcacggcataggccgctaccgcggcctgatgcacatggatatg
gggcagaaaaaccccgacggcagcccggccctgcaggaattcctgcacctggaatatgcc
gacaaggccatgctctacgtgcccgtgagccagctgcagctgatcggccgctacaccggc
gtctcggccgacgaggcgccgctgcacaagctgggcagcggccagtgggagaaggccagg
cgcaaggcggcaagccaagtgcgcgacgcggcggccgagctgctcaacatctacgcccgg
cgcgccgcgcgcgagggccatgccttccgctactcgccgcaggactacgagcagtttgcc
aacgacttcgggttcgaggagaccgccgaccagaacgccgccatccacgccgtggtgcag
gacatgatcagcccgcgccccatggaccgcctcgtctgcggcgacgtgggctttggcaag
accgaggtggctctgcgcgcctgcttcgtcgcggtgacgggtggcaagcaggtggccttt
ctggcgccgaccacgctgctcgccgagcagcatttccgcacgctgtccgaccgttttgcc
aaatggccggtgaaggtggccgaggtctcgcgctttcgctcgggcaaggagatctcggcc
gccgtgaaaggcattgccgacggcacggtggacatcgtcgtcggcacacacaagctattg
agcgaatcgacccagttcaagaacctgggccttttgatcatcgacgaggagcaccgcttt
ggcgtgcgccacaaggaggcgatgaagcagtttcgcgcagaggtggacgtgttgaccctc
accgccaccccgatcccgcgcaccatgggcatggcgctggagggcctgcgcgacctgtcg
gtgattgccaccgcaccgcagcgccgcctggccatcaagacctttgtgaggaacgaaggc
cagggcgtgatccgcgaggccgtgctgcgcgaattgaagcgcggcgggcaatgctacttt
ctgcacaacgaggtcgaaaccatagagaaccggcgccagaagctggaagaagtattgccc
gaggcgcgcatcgccgtggcccatggccagatgcccgagcgcgagctggaaaaggtgatg
cgcgactttgtcgcccagcgctacaacatcctgctgtgctcgaccatcatcgagaccggc
atcgacgtgccatcggccaacaccatcctgatcagccgcgccgacaagttcggcctggcg
cagctgcaccagctgcgcgggcgcgtggggcgcagccaccaccaggcctacgcctacctg
atggtgccggacctggacggcctgaccaaacaggcgcagcagcggctcgacgctatccag
cagatggaagagctgggcagcggcttctacctggccatgcatgacctggagatacgcggc
gccggcgaggtgctgggcgagaaccagagcggcaacatgctggaggtcggctttcagctc
tacaacgagatgctggccgaggccgtgcgttgcctgaaggccggcaaggagccggacctg
ctcgcacccatgcaggcggcgaccgacatcaacctgcacgccccggccctgctgcccgac
gactactgcagcgacgtgcacctgcgcctgtcgttctacaaaaagctggccacggcgcgc
accagcgaccagatcgacggcctgctggaagagatcgtggaccgtttcggcaagctgccg
gcgcaggcgcagacgctgatcgacgtgcaccgcctgcgtgtcctctcccagccctacggc
gtggtcaaggtggatgcggcccccggcgtgatcaccgtcaccttcaagccccagccgccg
atcgacccgatgaacatcatccaactgatccagaagaacaagcacatcaaactggccggc
aacgaaaaactgcgcatagagcgtgaactgcccgagccggcgcagcgcgcccagctggtg
cgcgacgtgctgcgcagcctggggcaaccgattgcagcccccgtggcagcgtaa
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integrated database retrieval system
