Diaphorobacter limosus: P4826_19320
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Entry
P4826_19320 CDS
T10112
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dls Diaphorobacter limosus
Pathway
dls02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dls00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
P4826_19320 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dls03021
]
P4826_19320 (rpoD)
Transcription machinery [BR:
dls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
P4826_19320 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF6819
DUF6522
Motif
Other DBs
NCBI-ProteinID:
WOO32498
UniProt:
A0ABZ0J3T6
LinkDB
All DBs
Position
complement(4010937..4013351)
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AA seq
804 aa
AA seq
DB search
MPVQKSAKSPKSATGTAAQAASEATTTVKTAAKAPAKAAKSKAAAAPEATTKVKTVPTPK
SSAELEKAADELLKKKPARAAKAAPAEDAQEAPKKKPGRKPKAADDEATAPKAAAKKAPA
KRGRKPKGKEEGLEDDADLSDIEADLEGEPEPEVSTTEAAPAEKVKPLRMKISKAKERAL
MKEFGLDETVLSEEDMAKRRAQLKKLITLGKTRGYLTQVEISDHLPDKLVDAETLEVVIS
MLSDMGVAVYEQTPDAETLFQNNVTPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYM
REMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILNMGEEIREGKVIINTVV
DGFSNPEEADDYVAEEDFDEYDEEDDDDGKGGSKAMTRLLEKLKNDALERFDELRALFEK
MHKIYDKEGYGTPAYMKVQHEISAKLMTIRFTAKTIEKLCDMVRAQVDDVRKKERELRRI
IVDKCGMPQETFIKEFPPNLLDRTWVEKQAAAAKPWSTVMQRNIPPIQELQQHLIDLQSR
VVVPLGELKAINKRMNQGESNSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQH
LQEFGFEPDASILAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNNTA
PVDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQI
EAKALRKLKHPSRSDKLRSFIDSL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttcaaaagtccgcgaagtcgcccaagtccgccaccggcaccgccgcacaggcc
gcttccgaagctacaaccaccgtgaaaaccgccgccaaggcgcccgcgaaagccgccaag
tccaaggcagccgctgcgcccgaggcgacgacgaaagtcaagaccgtgccaacgcccaaa
tcctcagccgagctggaaaaagccgccgacgaactgttgaagaaaaaacccgcgcgcgcc
gccaaggctgccccagccgaagacgctcaagaggcgcccaagaaaaaacccggccgcaaa
cccaaggccgccgacgacgaggcaacggcgcccaaggcggccgccaagaaggcccccgcc
aagcgcggccgcaagcccaagggcaaggaagaaggcctggaggacgatgccgacctgtcc
gacatcgaagccgacctggaaggtgagcccgaacccgaggtttccaccaccgaggccgcg
cccgccgagaaggtcaagcccctgcgcatgaagatcagcaaggccaaggaacgcgccttg
atgaaggagttcggcctggacgagacggtcctgtccgaagaagacatggccaagcgccgc
gcgcagctcaagaagctgatcaccctgggcaagacgcgcggctacctgacgcaggtcgag
atctccgaccacctgccggacaagctggtcgacgccgagacgctggaagtcgtgatctcc
atgctcagcgacatgggcgtggccgtgtacgagcagacgcccgacgcggaaaccctgttc
cagaacaacgtcacccccactgccaccacggtcgaggaagccgaggaagaggccgaggcc
gccctgtccaccgtggacagcgaattcggccgcaccaccgacccggtgcgcatgtacatg
cgcgagatgggcacggtggagctactcacgcgtgagggcgagatcgagatcgccaagcgc
atcgagggcggcctgatggacatgatggaggccatcagcgcctcgcccgcgaccatcgcc
gagatcctcaacatgggcgaggaaatccgcgagggcaaggtcatcatcaacaccgtggtc
gatggcttctccaaccccgaggaggccgacgactacgtggccgaggaagacttcgacgag
tacgacgaagaggacgacgacgacggcaagggcggctccaaggccatgacgcgcctgctg
gaaaagctcaagaacgacgcgctggagcgctttgacgagctgcgcgcgctgttcgagaag
atgcacaagatctacgacaaggagggctacggcacgccggcgtacatgaaggtgcagcac
gagatctcggccaagctgatgaccatacgcttcacggccaagaccatcgagaagctgtgc
gacatggtgcgtgcccaggtggacgatgtgcgcaagaaggagcgtgagctgcgccgcatc
atcgtggacaagtgcggcatgccgcaggagaccttcatcaaggagttcccgcccaacctg
ctcgaccgcacctgggtcgagaagcaggccgccgcggccaagccctggagcaccgtgatg
cagcgcaacatcccgccgatccaggagctgcagcagcacctgatcgacctgcagtcgcgc
gtggtcgtgccgctgggcgagctcaaggccatcaacaagcgcatgaaccagggcgaatcg
aattcgcgcgacgccaagaaggagatgatcgaggccaacctgcgcctggtgatctcgatt
gccaagaagtacaccaaccgcggcctgcagttcctggatctgatccaggagggcaacatc
ggcctgatgaaggccgtggacaagttcgaataccgccgcggctacaagttctcgacctac
gccacctggtggatccgccaggccatcacgcgctcgatcgccgaccaagcgcgcaccatc
cgcatcccggtgcacatgatcgagaccatcaacaagatgaaccgcatctcgcgccagcat
ctgcaggagttcggcttcgagcccgacgccagcatcctggccgagaagatggagatcccc
gaggacaagatccgcaagatcatgaagatcgccaaggagccgatctcgatggaaacgccc
atcggcgacgacgacgacagccacctgggcgacttcatcgaggacagcaacaacaccgcg
ccggtggatgccgccatgcaggccggcctgcgcgacgtggtcaaggacatcctggacggc
ctgacaccgcgcgaggccaaggtgctgcgcatgcgcttcggcatcgagatgacctcggat
cacacgctggaagaggtgggcaagcagttcgacgtgacgcgcgagcgcatccgccagatc
gaggccaaggcgctgcgcaagttgaagcaccccagccgcagcgacaagctgcgcagcttc
atcgattcgctgtaa
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