Diospyros lotus (date-plum): 127786726
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Entry
127786726 CDS
T10632
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127786726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127786726
03036 Chromosome and associated proteins [BR:
dlt03036
]
127786726
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127786726
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127786726
mRNA degradation factors
5'-3' decay
Decapping complex
127786726
Chromosome and associated proteins [BR:
dlt03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127786726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sirohm_synth_M
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127786726
NCBI-ProteinID:
XP_052170305
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All DBs
Position
12:36836932..36852893
Genome browser
AA seq
484 aa
AA seq
DB search
MNTRGRYPPGIGGGGGRGGGMNANYNFQPRNFQQQYMPRNPAQNHQQFQSQQQQWLRRNQ
LGAESSIDEVEKTVQSEAVDSSSQDWKAQLKVPPPDTRYRTEDVTATKGNEFEDYFLKRE
LLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNPVIQ
VVILVPTRELALQTSQVCKELGKHLKVQIMVSTGGTSLKDDIMRLYQPVHLLVGTPGRIL
DLAKKGVCVLKDCSMLAMDEADKLLSPEFQPSVEQLIHFLPVNRQILMFSATFPVTVKDF
KDRYLLKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRV
ELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI
NFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQA
IYCR
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaatactcgaggacgttatccgccggggattggaggcggaggcggccgcggtggcggt
atgaacgcaaattataatttccaaccgaggaacttccagcagcagtatatgccgaggaat
ccagcgcaaaatcatcaacagtttcagagccagcaacagcagtggctgaggaggaaccag
ttgggggctgaatcgagcatcgatgaagtcgagaaaacggtacagtcggaagctgtcgat
tcgagttcacaagattggaaggcgcagttaaaggtcccaccgcctgacactaggtacagg
actgaggacgtgacagctactaaaggaaatgaatttgaagactattttctaaagcgcgag
ctactgatgggaatatatgagaaaggctttgaaaggccatctcctatccaggaggaaagc
attccaattgctctaactggaagcgacattcttgctagggctaaaaatggaactggaaaa
actgctgccttttgcattcctgccttggaaaaaattgatcaagataaccctgttattcaa
gtggttatacttgtcccaacaagagaattggctctacagacttcccaagtctgtaaggag
cttgggaagcacttgaaggttcagatcatggttagtactggtggcactagcttaaaagat
gatataatgcgcttgtaccaaccagttcatctacttgttggtactcctgggagaatacta
gatcttgccaaaaaaggggtgtgtgttttgaaagattgttcaatgcttgcaatggatgag
gctgataaactgttgtctccggagttccaaccttcagtggagcagctaattcattttcta
ccagtaaatcgccaaatactgatgttttcagctacctttccagttactgttaaggatttc
aaagacagatatttgctgaagccctatgttattaaccttatggatgagcttacccttaag
gggataacacagttttatgcatttgttgaagaaagacagaaagtccactgcctaaacact
cttttctcaaagcttcaaatcaaccaatcaatcattttctgcaattcggttaatcgggta
gaactgctggccaagaaaattacagagcttggttattcctgcttctatattcatgcaaag
atgcttcaagatcaccgcaacagagtatttcatgattttcgtaatggtgcatgcaggaat
cttgtttgtacagatttgtttacacgggggatagacattcaagcagttaatgttgtgatt
aattttgatttccccaagaattcagagacttatttgcacagggttggtcgatcaggaagg
tttggacaccttggattagcagtgaatttgatcacttatgaggaccgtttcaacttgtat
aggattgagcaagaacttggaacggagataaaacaaattcctccgcatattgatcaggct
atttactgtcggtga
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