Diospyros lotus (date-plum): 127786789
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Entry
127786789 CDS
T10632
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127786789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127786789
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127786789
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127786789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
127786789
NCBI-ProteinID:
XP_052170406
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Position
12:complement(4349863..4350828)
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AA seq
321 aa
AA seq
DB search
MESSSTRIKQVWEWNFYNEMLCINDKLDTYHTIAFDTEFPGFLHQTPRHSSEEKVYEDLK
YNVDQTKIVQLGLTLFDDEGNIGGTWQINFYNFVVNERCQGQSSFQSSLNKDNVEKNGNN
NLNKKNRRRRDAVDMLHFSIAFNEILSNHKNLKWVTFHGLYDFAYLWRLLSGQDLPNSTL
EFSVMLGRVFGSVYDVKYMARFCEGLMDGELGLEKLSKILEVKRLGRAHQAGSDSLLTAN
VFLRMKMVYGFEEECFKGFLYGISTRTETSCPILVQFGLPMNYHIMQHLCDMISLPTCLP
SPENLIIVQGHYDIMLVPAMF
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggagagctcttcgactagaatcaagcaagtttgggagtggaatttctacaatgaaatg
ttatgtattaatgacaaacttgatacatatcatactatagcgtttgacaccgagttcccg
ggattcttgcatcagaccccgaggcactcttctgaagagaaagtatacgaagatcttaag
tacaatgttgaccagacaaaaattgtacaactgggattaacattgtttgacgatgaaggc
aatattggtggcacttggcaaataaatttttataattttgtagtcaatgaaagatgtcaa
ggtcaatcttcatttcagtcatcactgaacaaggacaatgttgagaaaaatgggaataat
aatttgaacaaaaagaacagaagaagaagggatgctgttgacatgctacatttctctatt
gcgtttaatgagatattatcgaatcataagaatctcaaatgggtcacatttcacggcctc
tacgactttgcatatctttggaggcttctaagtgggcaggacttaccaaattcgactttg
gagttctcggtcatgcttggacgtgtttttggatctgtgtacgatgtcaagtacatggct
agattttgtgaagggctgatggatggtgaactgggattagaaaaattatccaagattttg
gaagttaaaagattgggtcgtgctcatcaagcaggctcggacagtttattgacggctaat
gttttcttgagaatgaagatggtgtacgggtttgaagaagaatgcttcaagggttttttg
tatggaattagtacaagaacagagacttcttgccccatattggttcaattcggtctccct
atgaattaccatatcatgcaacacctttgcgatatgatatctttgcccacctgtcttcca
tcgccagaaaatcttatcatcgtgcaaggccactacgatataatgttggtacctgccatg
ttttga
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