Diospyros lotus (date-plum): 127788073
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Entry
127788073 CDS
T10632
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127788073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127788073
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127788073
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Peptidase_M15
Motif
Other DBs
NCBI-GeneID:
127788073
NCBI-ProteinID:
XP_052172154
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Position
1:complement(30737453..30758778)
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AA seq
258 aa
AA seq
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MAVKSGATPGTYSPSPSTTEAEKKKRRAAIFSEVDWIRSDGRGFHQCRPAFLRTGAVNAA
SGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSYTTFATPVRGQGSDHKEFSS
MLHKALEGAIILESFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVAAVS
VSCLGKNLVIDPVLEEESYQDGSLMITCMPSRNEVTQLTVTGEWSTPKIHEAVELCLDAC
SKLGKIMRSCLKEAASGE
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atggccgtaaaatctggagcaactccggggacgtactcgccgtcgccgtcgacgacggag
gcggagaagaagaagaggagagcggctattttcagtgaagtcgattggattcgctccgac
ggccgcggcttccaccagtgccgccctgcctttttaaggactggtgcagtgaatgccgca
tctgggtctgcttatgctgagtttggaaataccaaggttattgtgtctgtatttggtcca
agggaaagtaaaaaggcaatgatgtacagcgatataggtcggctaaattgtaatgtcagt
tacacaacttttgccactccagttcgtggacagggatcagaccacaaggagttttcatca
atgcttcataaagctttggaaggtgctataatactggagtcttttcctaagacaactgtg
gatgtgtttgcattggtgctggaatctagtggcagtgatcttcctgtggtgatatcatgt
gctagtcttgctctagcagatgctgggattatgatgtatgacttggttgctgctgtttct
gtgtcttgccttgggaagaatcttgttatcgatcccgttttagaagaggaaagttaccaa
gatggaagcctaatgattacttgcatgccttctcggaacgaggtcactcagctgactgtc
accggagaatggtctaccccaaagatacatgaggcagtggagctgtgtctcgatgcttgc
tctaagctcgggaagatcatgagatcttgcttgaaagaagctgcttctggtgaataa
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