Diospyros lotus (date-plum): 127788335
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Entry
127788335 CDS
T10632
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127788335
mRNA cycle factors
Common to processing body (P body) and stress granule
127788335
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
127788335
NCBI-ProteinID:
XP_052172436
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Position
13:36072908..36086510
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AA seq
980 aa
AA seq
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MMTVLMDNTSDSSSRERVQRLYSKNVELESRRRKAAQDRIPSDPNSWQQMRENYETIVLE
DHAFSEQHEIEYALWQLHYRRIEELRAHLSSALASAGSAVNQNGKVPSRSGSDRVTKIRS
QFKTFLSEATGFYHDLMVKVRAKYGLPLGYLSDDQENQNWSQDGSISAEVKKGLISCHRC
MIYLGDLARYKGLYGEGESKPDFAAASSYYIQASSLWPSSGNPHHQLAILASYSGEELVA
IYRYFRSLAVDSPFTTARDNLIIAFEKNRQSYSQLPRDAKTSSKTTRARMTGKGRGKGER
RIPKDNRVEPNPVKERASSMAETFKVFSIRFVRLNGILFTRTSMETFGEVFSEARNDLLE
LLASGPDEKYNFGSDVTECRLVIIRLIAVLIFSVHNASRETENQSYAEILQRSVLLQNAF
TATFEFMGHILERCIQLNDPSSSYLLPGIMVFVEWLACRQDIAVGTDVEEKQANARLSFW
NHCVSFLNKLLSSGFSSISDDEGDACFFNMSRYDESETANRLALFEDFELKGFLPLLPAQ
QILDFSRKHSFGSDGGMKGKQARVQRIIAAGKALANVVHIGQQGIYFDPKLKRFAIGVEP
PLSDDYSFSISSEISGLNGTGKEDPGQSQVNLALSQPKPQIYVEGEEEDEVIVFKPTVPD
KQLDQVASKLTSSEALSSGVNDSKVDFKNHIESVSASNDGFLLQNAFGTSLRQPTSHSNV
TAQYLPPIQLNTSTWLADQVSIANEMTNLSLLGNGFPMKHQLQDHLRALQPTPLSVTLLN
QPVNLSSGNKYPVQVPESAVPSSIDSIISSGVVGSLSMKPPSMMPAGMRKNPVSRPVRHL
GPPPGFKSTPPKPVGESLSGITLKDETSLLDDYSWLDGYQLPPSTQGIVFSNSINQSAQT
YHSASKSNTSTGMVSFPFPGKQVSTLRVQEEKEKGWQDQFSQQLKLYQEQQQQLQDGNQL
SIAAPEQYQGQTLWEGRFFV
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttctgatggataacacttcagattcttcatcaagagagcgagtacaacgt
ttatactccaagaatgttgagttggagagtagacgtcgcaaagcagcacaggacagaatt
ccctcagatcctaactcatggcaacagatgcgagagaattatgaaactattgtccttgaa
gatcatgctttctctgagcagcatgaaatagagtatgccttgtggcagttacattacagg
agaattgaggagttacgtgcacaccttagttctgcacttgcttccgcaggatcagcggtg
aatcagaatggaaaagttccctcacgatctggatctgatcgagtcacaaaaatccgttcc
caatttaagaccttcctttcagaagcaactggattttatcatgatttaatggtgaaagta
agagctaagtatggtctaccattgggttatttatccgatgatcaagaaaaccagaattgg
tcccaagatggaagtatatctgctgaagttaagaaaggcttgatctcttgccaccgttgt
atgatttaccttggggatcttgctcgttataaaggtttatatggggaaggtgagtccaag
ccagattttgcagcagcatcaagttactatatccaagcttcttcactttggccatcaagt
ggcaaccctcatcatcagcttgcaatactggcttcatattcaggggaggaattggtggcc
atttaccgatatttccggagtctggcagttgatagcccttttaccacagcaagggataat
ttgattattgcatttgaaaagaaccgtcagagttattcccagttgcctagggatgccaaa
acatcttctaagacaacccgtgcaaggatgactggtaaagggagaggaaaaggtgaaagg
aggattccgaaagataacagagtagaacctaaccctgtgaaggagagagcatctagtatg
gctgagacttttaaagtcttcagcattcgttttgtccggctaaatggcattctttttacg
cggacaagcatggagacatttggggaggttttctctgaggctagaaatgatttgctggag
ctactagcttctgggccagatgagaaatacaattttggttcagatgtgactgaatgtaga
cttgtgataattaggctgatagcagttctcatattcagtgttcataatgctagtagagaa
actgaaaatcagtcatatgctgagattttgcagcgatcagttttgcttcaaaatgcattt
actgctacttttgagttcatggggcacattcttgagagatgtatccagctgaatgatcct
tcatcaagttatttgttgcctggaattatggtttttgtggaatggttggcttgtcggcaa
gatattgcagttggcactgatgtggaggagaaacaagctaatgctagattgtctttctgg
aatcattgtgtttcctttttgaacaagcttttgtcaagtggattctcttctattagtgat
gatgaaggcgatgcatgttttttcaacatgagcaggtatgatgaaagtgaaactgcaaat
cgacttgcattgtttgaagattttgaactgaaaggattcctgcctcttcttcctgcccaa
caaatccttgatttttcaaggaagcattcatttggtagtgatggtggcatgaaggggaag
caagctcgtgttcagaggattatagcggctggaaaggctcttgccaatgtggttcatatt
gggcaacagggaatttattttgatccaaagttgaagagatttgctataggtgttgagccg
ccactgtctgatgattattcattttccatttcttcggagatttctggattaaatggtaca
ggtaaagaagatccaggtcagagtcaagttaatcttgcactctcacagccaaagccacag
atatatgtggaaggggaagaagaggatgaagtgattgtgttcaagccaactgtgccggac
aagcagcttgaccaggttgcttcaaaattgacctcttctgaggctttgagttctggcgtt
aatgactctaaggttgatttcaagaaccatattgagtctgtttcagcctcaaatgatggt
ttccttttgcagaatgcttttggtacaagtttaaggcaacctacatctcattctaatgtt
actgcccagtatttgccaccaatccagctaaacacttcaacatggcttgccgaccaagtt
tctattgcaaatgaaatgaccaatttgagcttattggggaatggctttcccatgaaacat
cagttgcaagatcatttgagagctttacagcctactcctctttcagttaccttacttaac
cagcctgtcaatctcagttctggaaataaatacccagttcaggtcccagaatctgcagta
ccttctagcattgattcaattatttcgtcaggagttgttgggagcttgtccatgaagcca
ccatccatgatgccagcaggtatgcgaaagaatcccgtgagccggccggttaggcacttg
ggtcccccacctgggttcaagtctacccctcccaaacccgtgggtgagtccttgtctggt
ataacactgaaggatgagacttcactgctggatgattatagctggcttgatggatatcag
ttgccgccatccacacaaggcattgtgttcagtaattccataaatcagtcagcacagaca
taccattctgcaagcaagagcaatacctcaacagggatggtcagctttccctttcctgga
aaacaagtttcaactttgcgtgttcaagaggagaaggagaaaggatggcaggatcagttt
tctcaacagctgaaactataccaggagcagcaacagcaacttcaagatggtaatcaacta
tcaattgctgcgccagagcagtatcaaggacagacgctctgggaaggtcgtttttttgtg
tga
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