Diospyros lotus (date-plum): 127788374
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Entry
127788374 CDS
T10632
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03430
Mismatch repair
dlt03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127788374
03460 Fanconi anemia pathway
127788374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127788374
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
127788374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
127788374
NCBI-ProteinID:
XP_052172522
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All DBs
Position
1:complement(35822462..35829969)
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AA seq
975 aa
AA seq
DB search
MAGVVATPVDSPIRPINKGVVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKEYG
EELFQVIDNGCGISPNNFEVLALKHHTSKLADFPDLQSLTTFGFRGEALSSLCALGNLTV
ETRTKNESVATHLTFDHSGLLTAERKTARQIGTTVTIKKLFCNLPVRSKEFHRNIRKEYG
KLISLLNAYALIAKGVRLVCTNTTGKNMKSVVLKTQGSGSLKDNIITVFGMSTFSCLEPV
NLCISDSCKIDGYLSKSGYGSGRNLGDRQFFFVNGRPVDMPKVSKLVNELYRGANSRQYP
IAIMNFIVPTASCDVNLTPDKRKVFFSDEGSILHSLRDALEKLYSPSHVSYSVNKYTEST
KDDNMSKAHPGHERSPLSLKQLSPVGNDFEKESGNNGQCGDCDIHVAMAKEGIQDSTSAT
VTKNPGSSVGEEFSIRDHGSKKADRISRCQDGELIRDHGSKKADRISRCQDGELIRDHGS
KNADRISRCQDGELTDHLNSSTSDEQAQFNLRVEKETVKANHSPSQVNIIQSSLTNFVTI
NKRKRESISTMLSEVPLLRNGPILCQSKKDNSTTYPSVLRNSMVNCQNLDGSDEDCMNEP
KPQRSSCFGADEVSIDTDIPLSKFSFLKNGEPEKVFKNDKKDLPFADVLVTAPSNESFEN
MIDLSDAAPIIQSSGSPSDSPLPSSGLKKCSMLQFSFKDLKTRWQKRLSRLRSCNYTCER
TKIKRNRSFTAATLELSQPVNEEWKARALAAATNELERLFKKEDFGKMKVIGQFNLGFII
GKLDQDLFIVDQHAADEKFNYEHIAQTTILNQQPLLRPLKLELSPEEEIVVSMHMDIIRK
NGFSLEEDFHAPPGHRFKLKAVPFSKNITFGVADVKELISILADSQGECSMMGSYKMDTV
DSVCPPRVRAMLASRACRSSVMIGDPLGRNEMQKILEHLTNLRSPWNCPHGRPTMRHLVD
LTDVGKWLDEHDSTL
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgtagtggctacaccggttgattcccccattcggcccataaacaaaggcgta
gttcacagaatttgcgcagggcaagtgatactcgatctctcttccgccgtcaaggagttg
gtggagaacagcttggacgccggcgccaccagcatagagatttccttgaaagagtacggc
gaagagttgttccaggtcattgataatggttgtggcatttcgcctaataatttcgaggtt
cttgcactcaagcatcacacttccaaattagcagattttcccgatcttcaatcattgacc
acttttggcttcagaggggaggcactgagttctctatgcgctttagggaatttgacagtt
gaaacaagaacaaaaaatgaatcagttgccactcacttgacttttgaccattcaggtctc
ttaactgctgaaagaaaaacagcacgtcaaattggtaccactgtcacgattaagaagttg
ttctgcaatttgccagtgaggagcaaagaatttcatcgcaacatacgcaaagaatatgga
aaacttatttccttattgaatgcatacgctcttattgcaaaaggtgttcgtctagtttgc
acaaatacaactgggaagaacatgaaatctgtagtactcaaaacacagggaagtggttcc
ctcaaagataacatcataacagtttttggcatgagcactttttcctgtttagaacctgtg
aatttatgtatatcagacagctgcaagattgatggttatctttccaagtctggatatgga
agtggacgcaatttgggtgatagacaattcttttttgtcaatggtcgaccagtggatatg
cctaaagtcagcaagcttgtgaatgaattatatagaggtgcaaattcccggcaatatccc
attgcaatcatgaattttattgttccaactgcatcttgtgatgtcaatttaacgcctgac
aaaagaaaagttttcttttctgatgaaggttctattttacactctttaagggatgcttta
gaaaagctatactcaccaagtcatgtaagttattctgttaacaaatatacagaatccact
aaggatgacaatatgtctaaggcacatcctggtcatgaaagatcgccattatcactgaag
cagctgtctccagttggcaatgattttgagaaagaatcaggcaacaatggacaatgtgga
gattgtgacatacatgtcgcaatggccaaagagggcattcaagactccactagtgcaaca
gtaacaaaaaatcctggaagttctgttggtgaagaattcagtattagagatcatggaagc
aagaaggctgatagaatttctcggtgccaggatggagaacttattagagatcatggaagc
aagaaggctgatagaatttctcggtgccaggatggagaacttattagagatcatggaagc
aagaacgctgatagaatttctcggtgccaggatggagaacttacagatcatctgaatagt
tctacaagtgatgaacaggctcagttcaacttgagagtggagaaagaaactgttaaagct
aatcattcacctagtcaggtaaatatcatacagtcatcactcaccaactttgtaaccata
aacaagagaaaacgtgaaagtattagcacaatgttgtctgaggtgcctctcttgagaaat
ggacctattctgtgtcaatcgaagaaagacaattccacaacatatccttcagttttgaga
aattcgatggtcaactgtcagaatcttgatggatctgatgaagattgcatgaatgagcct
aaacctcagcgttcttcttgttttggagcagatgaagtctctattgacacagacattcca
cttagtaaattttcttttctaaagaatggagaacctgagaaggtatttaagaacgacaag
aaagatttaccctttgctgatgtgctagtaactgctccatctaatgaaagtttcgagaat
atgatagatctttcggatgcagctcctataatacagtcttctggttcaccttcagattct
ccattgccttcttctggtttaaagaaatgttctatgttgcaatttagttttaaggacttg
aagacaaggtggcagaagaggctctccagattgcggtcctgcaattatacatgtgaaaga
acaaagatcaaaagaaataggtccttcactgctgcaacgctagagctttctcaaccagta
aatgaagaatggaaggccagggctttggctgcagctactaatgagctggaaagactattc
aaaaaagaagactttggcaaaatgaaggtaattggtcaattcaatcttggttttatcatt
ggcaagctagatcaagacctgtttatcgtggatcagcatgctgcagacgagaagttcaat
tatgagcatattgcacagacaaccatcttgaaccaacagcctttgcttcggccactaaag
ttggaattatctcctgaagaagaaatagttgtgtccatgcacatggatattattaggaaa
aatggatttagtttggaagaagatttccatgctccacctgggcaccgttttaaattgaaa
gctgttcccttcagtaagaatataacttttggagtggcagatgtgaaggagcttatttcc
attcttgctgatagccaaggggaatgctcaatgatgggtagttacaaaatggacactgtt
gactcagtttgcccaccaagagttcgtgcaatgctagcttctcgcgcctgcagatcatcc
gttatgattggagatccactaggaagaaatgagatgcagaagatccttgaacatctgacg
aatctcagatctccctggaattgtccacacggcagaccaacaatgcgtcacctggtcgac
ttaactgacgtgggtaaatggttagacgaacatgacagtactctctga
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