Diospyros lotus (date-plum): 127788476
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Entry
127788476 CDS
T10632
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127788476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127788476
03012 Translation factors [BR:
dlt03012
]
127788476
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127788476
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127788476
Translation factors [BR:
dlt03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127788476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
AAA_16
PhoH
AAA_23
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
127788476
NCBI-ProteinID:
XP_052172749
LinkDB
All DBs
Position
13:2271379..2307694
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AA seq
1159 aa
AA seq
DB search
MRMHSRRLGFLLASCARRSSLPALLPDTKSAAVARPRNGRFFIAVPTSSRIVLFNFLFSG
RRSFCGGYAVEQFSDDDYDCDYDNHKASSSVANIDEWKWKLSLLLRNEQEQEILSRDKRD
RRDYEQISNLAKRMGLYCEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEG
LLQEHLDRLQLSSEKVCSSSAEAKATEEVEDVNPDDGPDSLLDRSVMEKVLHRQSLRMRN
MQRAWLESPEGMRMLDFRRSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYVLE
SEIESGRGAFCNIICTQPRRISAMAVAERVSTERGEPLGDSVGYKVRLEGIKGKNTHLLF
CTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL
NAELFSNYFGGAPTIHIPGFTYPVRAHFLEDVLEITGYKLTSFNQIDDYGQEKMWKTQRQ
LAPRKRKNQINALVEDALNKSNFENYGARTRDSLSYWAPDSIGFNLIEAVLCHICRKERA
GAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKAPPNVRKI
VLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ
PGVCFHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGDFLSAALQPPKPLAV
QNAIDFLKMIGALDENESLTYLGRFLSLLPVDPKLGKMLVMGAIFRCYDPVLTIVAGLSV
RDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEGEGSAYEYCWRNFLSAQ
TLQAIHSLRKQFSFILRDAGLLDADTGTNNKLSHNQSLVRAIICSGLFPGITSVVHRETS
MSFKTMDDGQVLLYANSVNAHYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGA
LDFGVLAGHLKMLGGYIDFFMDPSLAEFYVKLKEELNKLLQNKLQDRSLDIHKEGKYLML
AVQELVSGDQCEGRFVFGRESKKPKAPSDSERFTRDGTNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKESKRHAERDAAIEALAWLTHTSDKSWDEGDNSPPDV
TDNMMKLLGKRRRSKGRPS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgcactccaggaggctagggtttctcttagcatcgtgcgccagaagatcgtca
ctgcctgccctgctgcccgatacaaaatccgctgccgttgcgcgcccgcgcaatggccga
tttttcattgcagtgccaacgagcagtagaattgttttgttcaatttcctgttctccgga
cgccgatcgttttgcgggggatacgccgtcgagcagttctccgatgacgactatgactgt
gactacgacaatcataaggcgtcatcctcggttgccaatatcgatgaatggaaatggaaa
cttagcttgctattacgcaatgaacaagaacaggaaattttgtccagagataaaagagac
aggagagattatgagcaaatatctaaccttgccaaaaggatggggctttattgcgaaatg
tatggaaaagtggtggttgctagcaaggttcctcttccgaattataggcctgatcttgat
gataaacggcctcaaagggaggtggttatccctctaagcttgcaaaggagagtagaaggt
ttgctgcaggaacaccttgatagactgcaattgagttctgaaaaggtctgtagctcctca
gctgaggccaaggccaccgaggaggttgaagatgtaaatccagatgatggtcctgattct
ttgctagatagatctgttatggaaaaagttcttcacaggcagagtttgagaatgcgtaac
atgcagagagcttggctggaatccccggaaggcatgaggatgctagacttccgcagatct
ctaccagcattcaaggagaaggagaggctgctgcaggcaattgcaagaaaccaggttatt
gtcatctctggagagactggatgtggtaagaccactcaacttcctcagtatgtattggag
tcagagattgaatctggtcgtggagcattctgtaatataatttgtacgcaacctcgaaga
atatcagcaatggctgttgcagaaagagtgtctactgagaggggtgaacctcttggtgat
tcagttggctacaaagttcggctagaaggaattaaagggaaaaacactcatttgcttttt
tgtacaagtggtattttactgcgacggctgttgagtgaccacaacctgaatggtgtaacc
catgtgtttgttgatgaaattcatgagcgaggcatgaatgaagactttctattaattgtg
ttaaaggatcttcttccacggcggcgagatttaagattaattttaatgagtgctactttg
aatgctgagttattctctaattattttggaggagcaccaacaatccatattccgggcttc
acataccctgtgagagcacattttctggaagatgtactggaaataactggatataagttg
acttctttcaatcaaattgatgattatggccaagagaagatgtggaaaacacaacgacag
ctagcacctcggaaacggaaaaatcagataaatgcacttgttgaggatgctcttaataaa
tcaaattttgagaattatggtgccaggacacgtgattcactttcatattgggctcctgat
tctattggttttaatcttattgaggctgtgttatgccatatatgtcggaaggagcgggct
ggagctgtcctagtgtttatgactggctgggaggacattagttgtttgagggatcaactt
aaagctcatcctctgttaggggatcctaacagggttttgctgcttacttgtcatggttca
atggcaacatctgaacaaaaactcatatttgagaaggcaccacctaatgtacgtaaaata
gtacttgctacaaatatggcagaggcaagtattactatcaatgatgtagtgtttgttgtt
gattgtggaaaagcaaaggaaaccacttatgatgctttgaataataccccttgtctccta
ccatcatggatatcacaagcttctgcacggcagagaaggggtagggctggtcgtgtgcag
ccaggcgtttgctttcatctttacccacgatgtgtttatgaagcttttgctgaatatcaa
cttcctgaacttctaagaactcctttgaactccctctgcttgcaaataaaaagtttgcag
gttggaagtataggagattttctgtcagctgctttgcagccaccaaaaccattggctgtc
caaaatgctattgattttttgaagatgattggggcattagatgagaatgaaagtcttaca
tatcttggacggtttctttcactgctgcctgtggatcccaagctaggaaaaatgctagta
atgggtgctatctttcgttgctatgatcctgttctaacaattgttgctggacttagtgtc
agggatccttttcttttgcctcaagataaaaaggatttagcagggacggcaaagtcaaga
ttttctgcaaaggactacagtgatcatatggcacttgtccgtgcatatgaaggatggaaa
gatgcagaaggagaaggatcagcatatgagtattgctggagaaatttcctttctgcccaa
acacttcaagccatccattctcttagaaagcaatttagcttcattttgagggatgctggg
ctgctagatgctgatactgggactaacaataaattaagtcacaaccaatcactggttcgt
gcaattatatgttctggcctctttcctggaataacatctgtagtgcacagagagacatcc
atgtctttcaaaacaatggatgatggccaggtcttgctctatgcgaattcagtgaatgcg
cattaccagacaattccctacccatggttggtttttggcgaaaaagtgaaagtcaataca
gtcttcattcgtgattcaactggtgtttctgattctatcctgatactttttggcggtgct
cttgactttggagttctggctggacatttgaaaatgttgggaggatatattgacttcttc
atggatccttctctggcggagttctatgtgaagctcaaagaggagcttaataagcttctg
cagaataagctccaagatcggagccttgacatccacaaggaaggaaagtacctcatgctt
gctgttcaggaattggtatctggagatcagtgcgaaggaaggtttgtatttggtcgtgaa
agcaagaagcctaaagcgcctagtgacagcgagagatttacaagggatgggacgaacccc
aagagcctgctacaaaccctgttgatgagggcaggtcactcaccgcccaagtacaagacc
aagcatctcaaaacaaatgaattccgagctctggttgagtttaagggaatgcaatttgtg
gggaagcccaaggaaagcaaacggcatgcagagcgggatgctgctatagaagcattggcc
tggttgactcatacctctgacaaaagttgggatgaaggtgataactccccgcccgacgtc
acagacaacatgatgaaacttctcggtaagcgcagaagatcaaaaggcaggcctagttga
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integrated database retrieval system
