Diospyros lotus (date-plum): 127788514
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Entry
127788514 CDS
T10632
Name
(RefSeq) THO complex subunit 4A-like isoform X1
KO
K12881
THO complex subunit 4
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03013
Nucleocytoplasmic transport
dlt03015
mRNA surveillance pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127788514
09122 Translation
03013 Nucleocytoplasmic transport
127788514
03015 mRNA surveillance pathway
127788514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127788514
03041 Spliceosome [BR:
dlt03041
]
127788514
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127788514
TREX complex
127788514
Spliceosome [BR:
dlt03041
]
Complex C
Other components
EJC/TREX
127788514
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127788514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
127788514
NCBI-ProteinID:
XP_052172847
LinkDB
All DBs
Position
13:8800859..8812472
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AA seq
248 aa
AA seq
DB search
MSNLDMSLDDIIKMNKKSGGGGGANARGRARNSGPGPARRGPNRTANRATPYSVGKVQAP
ESTWQHDMFADHAAAFPLLAGRVSAIETGTKLFISNLDYGVSDEDIKELFSEFGDLKRYS
IHYDRSGRSKGTADVVFSRRKDAEAAVKRYNNIQLDGKPMKIEIVGTNVATRTALPPSTD
SLYGNQNSASRSSQGRGVAAAGGRPRGGGGGRGFRRGRGRGRDGGEKVSAEDLDADLEKY
HAEAMQTN
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatctggacatgtctctcgatgatattataaagatgaacaagaaatccggcggg
ggaggaggagctaacgctagaggcagagctcggaactcgggccctggaccagctcgccgg
ggcccgaatcggaccgccaatcgcgccactccctactcagttggaaaggttcaagcgccg
gaaagcacgtggcagcacgacatgttcgcggatcacgcggcggcgttcccgttgctggct
ggccgggtgtctgcaatagagaccggcacgaaactcttcatctctaacttggattatgga
gtttctgatgaagacatcaaggagctcttttcagagtttggggatctgaaacgatactca
atccattatgataggagcggtagatcaaagggaacggcagatgtagtcttttcacgaaga
aaagatgctgaggcagctgtcaaaagatacaacaacattcaacttgacggaaaacccatg
aaaattgagattgtaggaacaaatgttgcaactcgcactgctcttcctccatctacagac
agcttgtatggaaatcaaaatagtgcatccagaagcagccaaggaagaggggttgccgca
gccggaggacggcctcgaggtggaggtggcggccggggctttaggagagggcgtggccgc
ggcagagatggtggcgaaaaagtatctgcagaagatctggatgctgatctggagaagtac
cacgcagaagcaatgcaaacaaattga
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