Diospyros lotus (date-plum): 127789802
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Entry
127789802 CDS
T10632
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127789802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127789802
Spliceosome [BR:
dlt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127789802
Complex C
U5 SnRNP specific factors
127789802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
127789802
NCBI-ProteinID:
XP_052174765
LinkDB
All DBs
Position
14:25025216..25043540
Genome browser
AA seq
2348 aa
AA seq
DB search
MWNNNGQIAPPGTGGSSIPPPPAAQPSYTVLPSPAEAEARLEEKARKWMQLNSKRYGDKR
KFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVYKLLENIPMP
WEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPF
DDEEPPLDYADNLLDVDPLEPIQLEMDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHL
SLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGD
EDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAF
YYDPLIHPITTANKERREKKVHEEDDDDDFYLPEGVDPLLRDTPLYTDTTAAGISLLFAP
RPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQK
KKHLFRSLGATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVK
TLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQYRLGNVDAFQLADGLQYTFSHVGQL
TGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLL
ERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKART
ILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVD
KTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFP
PLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQ
RAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPP
PLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADY
VTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMP
NEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGY
NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFS
MCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQI
LMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKM
PSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPN
LYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDR
HTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEH
TLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANV
YVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIE
TVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLR
WGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLA
QAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYR
VTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAA
LVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLIL
KATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHI
WPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIA
EIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRV
NHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIGM
PPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDVTAHARILENNKQWD
GERCIILTCSFTPGSCSLTAYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRF
LGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGAPREYYHEDHRPTHYLEFSNLEEGETAE
ADREDTFS
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgtggaataacaatggtcagatcgcgccgccgggcaccggagggtcttcgattccccct
cctccggcggcacagccgtcttacactgtcctgccgtctccggcagaggcggaggctcgc
ttggaggagaaagcgaggaaatggatgcagttgaactcgaagcggtacggtgacaagcgg
aagttcggattcgttgagactcagaaggaagatatgcctcccgagcatgtcaggaagatt
attagggatcatggtgatatgtcctcaaagaaattccgtcatgataaacgtgtttatctt
ggagcccttaaatttgtcccacatgcagtttacaagcttctagagaacatcccaatgcct
tgggaacaggtccgtgatgtaaaggttttataccatattactggagctatcacattcgtg
aatgaaataccatgggttgtggagcccatttatttggctcagtggggtacaatgtggatc
atgatgaggagagaaaagagggatcgcaggcattttaaaagaatgagatttcctcctttt
gatgatgaggaacccccattggattacgctgataatcttttagatgtagatcctctggag
cctattcaactagagatggatgaggaagaagattcagctgtatatacctggttttatgac
cataaaccacttgtcaaaacaaagcttataaatggtccaagttatcggaaatggcatctc
tctcttcctatcatggctacacttcatcggctggcggggcaacttctctctgatctaatt
gatcgcaattatttctacttgtttgatatggagtcattttttactgctaaagctctgaac
atgtgcattcctggtggtcccaagtttgaacctttgtaccgtgacatggagaaaggtgat
gaagactggaatgaattcaatgacataaacaaacttatcattcgatcacctctgaggaca
gagtacagaattgcattccctcatctttataacaacaggcccaggaaagtaaagctatgt
gtatatcacacaccaatgattatgtacataaaaactgaggatccagatctccccgcattt
tattatgatcctctaatacaccccataaccactgctaacaaagagcggcgtgagaaaaag
gttcatgaagaggatgatgatgatgatttttatcttcctgagggagtagatccgcttctg
agagatactccattatatactgacactacagctgctggtatttccttattatttgcccct
cgtccttttaacatgaggtctggtcggatgcgacgagctgaagatattccccttgtgtct
gagtggtacaaggaacattgtcctccatcataccctgttaaagtccgggtcagctaccag
aaattgttgaagtgctttgtgttgaatgagctacatcatagaccaccaaaggctcagaag
aagaagcacttattccgctctcttggtgctacaaagtttttccaaactactgaactggat
tgggctgaggcaggtctccaagtttgtaaacaagggtataacatgcttaatctgttgata
cacaggaagaatttgaattatctccatcttgactataacttcaacctaaagcctgtcaag
acacttactactaaggagcgtaagaagtcaaggttcggtaatgccttccatctgtgccgt
gaaatattgcggctgacaaagcttgtagttgatgctaatatacagtaccgcttgggaaat
gtagatgcatttcagttggcagatggcttgcaatatacattttcacatgtgggccagttg
acaggcatgtaccggtacaagtacaggctcatgcgacagattcgaatgtgcaaagatttg
aagcacttgatttactaccgattcaatactggaccagtggggaaaggtcctggatgtgga
ttctgggcaccaatgtggagagtatggttgttcttcctgaggggcatagtgcctctgctg
gaaaggtggttgggtaatttacttgcacgacagtttgaggggcggcattcaaaaggagta
gccaagactgttacaaagcagcgtgttgaaagccactttgatcttgagcttcgtgctgct
gttatgcatgatgttcttgatgccatgccagagggcatcaagcaaaataaggcaagaact
atcctgcagcatcttagtgaagcatggcgctgttggaaagcaaatattccttggaaggtt
cctggattgcctgttccaattgagaatatgattcttcgttatgtcaagtccaaagcagat
tggtggacaaatgttgcccattataatcgtgaacgtataagaaggggtgcaacagttgat
aagacagtttgtcgcaagaatctgggaagattgactcgcctctggttgaaggctgaacag
gaacggcagcataattacttgaaggatggtccatatgtgacaccagaggaagctgtggct
atttacacaactactgttcattggctggaatcgcggaaattttctcctattccatttcct
ccattgtcttacaagcatgacacaaagcttcttatccttgctctcgagaggttgaaagaa
tcttatagcgtggctgtgagattaaatcaactacaaagagaggagttaggtcttattgag
caagcttatgataacccacatgaagcattgtctcgcataaagcgtcacctccttacacag
cgtgccttcaaagaagttggcattgagtttatggatttgtacagctatctgattccagtt
tacgagattgaaccacttgagaaaattactgatgcatatcttgaccaatacctgtggtat
gaaggtgacaaacgccatcttttccccaattggattaagccagctgactcggagccacca
ccattactagtctataaatggtgccagggtataaacaatttgcaaggaatatgggacact
agtgaagggcagtgtgttgtgatgcttcagactaagtttgagaaattctttgaaaaaatt
gacttgacaatgctgaataggcttctgcgactggtccttgatcacaacattgctgattat
gtcactgcaaagaacaatgttgtattatcgtacaaggatatgagtcacacaaactcttac
gggcttatacgtggacttcaattcgcttctttcgtggtacagtattatgggctggtgcta
gaccttctacttcttggtttgactagagccagtgaaattgctggtcctccacaaatgcca
aacgagttcattacttattgggacactaaagttgaaactcggcatccaattcgattgtac
tcgcgatatattgacaaagtgcatatattgttccgtttcacccatgaagaagcaagggac
ctcatccagcgttatcttactgaacatcccgatcctaataatgagaatatggttgggtat
aacaataagaagtgttggccaagagatgcaagaatgaggctaatgaagcatgatgtcaat
cttggaagaagtgttttttgggatatgaagaaccgtcttcctcgaagtatcacgacattg
gagtgggagaacagttttgtttctgtttacagtaaagacaatccaaatttgcttttcagc
atgtgtggttttgaagttcggatactgcccaaaataagaatgacccaagaggcattcagc
aatacaagagacggtgtttggaatctgcagaatgaacaaactaaagaacggactgcagtt
gctttcttaagggttgatgatgaacacatgaaggtgtttgagaatcgcgtgaggcaaatt
cttatgtcttcgggttcaacaacattcacaaaaattgtcaacaaatggaatacagctctt
ataggcctcatgacatacttccgtgaagccactgtgcacacacaagagttgttagatttg
ctggtgaaatgtgaaaacaaaattcaaacccgtataaaaatcggattgaactcaaaaatg
cctagcaggttccctcctgtcatattttatactccaaaggaaattggtgggctcggtatg
ttatctatgggtcacatactgataccccaaagtgatctccgttacagtcaacagacagat
gttggcgtcacacattttaggagtggaatgagccatgaagaggaccagctgattccaaat
ctttatcgttacatacagccgtgggagagtgagttcattgattctcagcgagtatgggca
gaatatgctctcaagaggcaagaagctcaatcgcaaaataggcgtttgactcttgaagat
ttggaagattcatgggatcgtggaatacctcgaatcaataccttgttccagaaggatcgc
cacacccttgcatatgacaaaggatggagagttcgtacagattttaaacagtatcaagtt
ctgaagcaaaatccattctggtggacgcaccagagacatgatggaaaattatggaacttg
aataactatcgtactgatgtcatccaagcacttggaggagttgaaggaatacttgagcat
acattatttaaaggaacttactttcctacttgggagggtctcttctgggagaaggcttct
ggttttgaggagtccatgaagtataaaaagctgactaatgcacagagatctggtcttaat
caaatccctaaccggaggtttaccctttggtggtcacctaccattaatagggccaatgtc
tatgttggtttccaagtgcagctggatttaacgggtatattcatgcatgggaagattcca
actctgaagatctcactcattcagatattccgggctcacttgtggcagaagattcatgag
agtgtcgtcatggacctgtgccaagttttggatcaggagttggatgcacttgagattgaa
acggtccagaaggaaaccatccatccaaggaagagttacaaaatgaacagctcttgtgct
gacattcttttatttgctgcgcatagatggcccatgtcgaaaccaagtctagtggctgag
tcaaaggatgtgtttgatcaaaaagcaagcaacaaatactggatagatgttcagcttcgt
tggggagactatgactctcatgatattgaacgttatactagggccaaatttatggattac
actacagacaacatgtctatctatccttcaccaactggggtaatgattggtcttgatctt
gcttacaacttgcattctgcatttgggaactggtttcctggatcaaaaccactgctagct
caggccatgaataagataatgaagtcaaatcctgctttatatgttttgagggagcgcatc
aggaaagggttgcagttgtattcttctgagcctacagagccatacttgtcatctcagaac
tatggagagatattcagcaatcagataatttggtttgttgatgacacaaatgtgtatcgt
gtcacaattcataagacatttgaaggaaatctcacaactaaacccataaatggtgctata
ttcatttttaatccaaggacggggcagctgtttctgaaggtcattcacacgagtgtatgg
gcaggacaaaagcgtctgggtcagttagccaagtggaagacagcagaagaagtggcagct
cttgtgcggtccctgcctgttgaagaacaaccaaaacaaatcattgtgacacgtaaagga
atgttggatcctctggaggtccacttactggactttcccaacattgttattaagggaagt
gagctgcaacttcccttccaagcttgcttgaagattgagaaatttggtgatctcattttg
aaggccacagagccacaaatggtcttattcaacatatatgatgattggttgaaaagtatt
tcatcctacaccgcattctccagactcattttgattctgcgcgctcttcatgtgaacaat
gagaaggcaaaaatgttactaaagcctgataagacaattgtcactgaaccccaccacatc
tggccatccctttcagatgatcagtggatgaaggttgaggtggctttgagagatcttata
ctttcagattatgccaagaagaataatgtgaacacatcagcattgacacagtctgagatt
cgtgatataattcttggagctgaaattacgccaccctcacagcaaagacaacaaatagca
gagattgagaaacaggcaaaagaagcaagtcaattgactgcggtaactacaaggacaaca
aatgttcacggtgatgaactcattgtcaccaccaccagtccctatgagcaggcagcattt
gggtctaaaactgactggcgtgtcagagcaatttcagccacaaatctctatctccgggtg
aatcatatatacgtgaattcagaggacataaaggaaacgggctatacatacatcatgccc
aaaaacattttgaagaagttcatatgcattgcagatctgcggactcaaattgctggatac
ttgtatggcataagtcctccggacaatcctcaggtcaaagaaattcgttgtattggcatg
ccaccacagtggggtactcatcagcaagtgcatctcccatcagcccttcctgagcacgat
tttctgaatgatttagagcctttagggtggatgcacacacaaccaaatgaacttcctcaa
ttgtctccccaggatgttaccgcccatgcacggatccttgagaacaacaaacaatgggat
ggggaaagatgcattatcctgacttgcagttttacgccaggctcatgttcgttgactgca
tataagcttaccccgactgggtatgagtggggacgggccaacaaggacactggaagcaat
cctcatggctatttgccaacgcattacgagaaggtccagatgctactgagtgaccgcttc
cttgggttctacatgataccggataacggcccatggaattacaacttcatgggagtgaag
cacacggtgagcatgaagtacggggtgaagctgggagcgccgcgagagtactaccacgag
gaccataggccaactcactatctggagttcagcaacttggaggagggtgagactgcagag
gctgacagggaggataccttctcatga
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integrated database retrieval system
