Diospyros lotus (date-plum): 127789912
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Entry
127789912 CDS
T10632
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127789912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127789912
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127789912
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Importin_rep_5
Motif
Other DBs
NCBI-GeneID:
127789912
NCBI-ProteinID:
XP_052174962
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All DBs
Position
14:6827529..6866897
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AA seq
933 aa
AA seq
DB search
MEIDPSQSTKHKAEALQGFAAGPLSTSLAKLSGSSRGIPSDKDFHFYRNFNEFRAPVNEI
VDASQSMLGTIGSSANLWGRELGFPEDLDDAYDWLVNVNDEVFERFDVSVDEFRSLRRKE
EETGVPMTSSVDFDSGFQVVYGKKKKKKDGGEVPNSLSAVKLASRDKRTMGPKAKVPFHI
RSIPRPQDEFKILVNNSTQPFQHVWLQRSEDGSRSVHPQENFTALDFVDKNIGDFESLKP
PPLESTPFNYVDEVKDLKELVAKLRDVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVV
DTLKLRIQIGPYLRELFKDPTKKKVMHGADRDILWLQRDFGIYICNLFDTGQASRVLKLE
RNSLEYLLFHFCGVTANKEYQNADWRLRPLPEEMLRYAREDTHYLLHIYDLLRIRLLSEK
SDDLLVEVYKRSYDLCMQLYEKELLTESSYLHIYGLQGADLNAQQLAVVAGLCEWRDVVA
RAEDESTGYILPNKTLLEIAKQMPVTTTKLLHLVKSKHPCVERNLNSVVSVIKQSMQNAV
AFETAAERLKEERMEKASQRNIVSTDRSEAPPEVPVGLKTTATTENQGAGMSGEPPAPSH
FRGTLKLESNFAEISKNVQEGALEHNGGQNASIESQTSDNASRLQGESPITSGQSKEGAI
AAIHVLQKPSHAFGAMLGSSSGKRKLVSDKKEKEAMKLEQIQSSVSFPFHSFSGMDEQLQ
PPVEGMRHDFPPAVQGGVSNLGDVILLDFPPAVQGGVSNLGDVILLDDNACVEGTSSGEP
TREQLDHNEEHIEGSDFEMAEGDEAMSLTDLSSSFQRCFQSTSQARKLKQAGTSKDPEGL
LQLKPFDYEGARRQIKFGEGSRAEPKEKGDEGHADRSRVDPVDRASSAATSAGDSQSQSQ
SQSRRDDEGTRNLAQGRRRQAFPASGNRSATFR
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgacccctctcagtccacgaagcacaaggccgaggctttacagggcttcgca
gctggccctctctcgacttctctagccaaactttctggttcgtctcggggcataccgtcc
gataaagacttccatttctatcgcaacttcaatgaattccgggcgccggtgaacgagatt
gtcgacgcttcccaatcaatgctcggcacaattggctcgtcggctaatctatggggtcga
gagttgggctttcctgaggatcttgacgacgcgtacgactggctggtgaacgtgaacgat
gaggttttcgagaggttcgacgtgtcggtggatgagtttcggagcctgagaaggaaggaa
gaggagaccggggtgccaatgacgagttcggtggatttcgatagtggctttcaggtagtg
tatgggaagaagaagaagaagaaggatgggggggaggtgccgaattctttgtccgcagtg
aagttggcttccagggataagagaaccatggggccgaaggcgaaggtgccgtttcatata
cggtcaatccctcggccgcaggacgagtttaagatactggtgaataattcgacccagccg
tttcagcatgtctggttgcagaggagcgaggatggctccaggtctgtacatccacaggaa
aatttcactgccttggattttgttgataaaaatatcggagactttgagtctttgaagcca
cctccacttgagtctactcctttcaactatgtggatgaggttaaagacttgaaagaatta
gttgctaagctgcgtgatgtggacgaatttgcggttgatttggaacataatcagtatcga
tcttttcaaggattaacttgtctgatgcaaatctcaactagaaccgaggattttgttgtt
gatacactgaagcttcgcattcagattggtccttatctgagggaactattcaaagatcct
acaaagaaaaaggttatgcatggagcagatcgtgatattttgtggctccagagggacttt
ggcatctacatctgcaatctgtttgatactgggcaggcctcgagagtattgaagttggaa
agaaatagtctggagtatcttctgtttcacttttgtggagtgacggctaacaaagaatac
caaaatgcagattggagacttcgccctcttcctgaagagatgctcagatatgccagagag
gacacacattatttgctgcatatatatgatctgttgagaattaggctgctctcagaaaaa
tctgatgacctactggtagaggtctacaagcggagttatgatttatgcatgcagctctat
gagaaggaacttctgacagagagttcatacctccacatatatggtttgcaaggtgctgat
ctcaatgcccagcagcttgcagttgttgcaggactttgtgaatggagagatgttgttgcc
cgtgctgaggatgagagcactggttatatattgccaaacaaaacacttcttgaaattgcc
aaacagatgcctgttactacaactaagctgcttcatttggtgaaatcaaagcacccatgc
gttgagcgaaatctcaattcagttgttagtgtcataaagcagtccatgcagaatgctgtt
gcctttgaaactgctgctgagcgcttaaaagaggagcgtatggaaaaggcatcccaacga
aatatagtgtctactgatagaagtgaggctcctcctgaagtccctgttggattaaagacc
acagcaacaacagaaaatcagggtgctggcatgtctggagaacctccagctccttcacat
tttagggggactttgaagcttgaaagcaattttgctgaaattagtaaaaatgtacaggaa
ggtgctttggaacataatggtggtcaaaatgcaagcatagaaagtcaaacaagtgacaat
gccagcaggcttcaaggagaaagccccatcacttcagggcagagcaaagagggtgccata
gctgctattcacgtgctacagaagccaagccatgcttttggggcaatgctggggagttct
tcagggaagagaaagttggtttctgataaaaaagaaaaggaagcaatgaagctggagcag
atacaatcttcagtaagctttccattccattcattctccgggatggatgaacagttgcaa
ccgcctgtggaaggtatgcgccacgactttcctccagctgtccaaggtggagtgtccaac
ttaggagatgttatactgctagactttcctccagctgtccaaggtggagtgtccaactta
ggagatgttatactgctagacgacaatgcatgtgttgagggaacatcgtctggtgaaccc
acaagggaacagttggaccacaacgaagaacacattgaaggttctgatttcgaaatggct
gagggagatgaggccatgtctctcactgacttatcctccagcttccaaaggtgtttccag
tcaaccagccaagcaagaaagctcaaacaagccggaacgtccaaagatcctgaagggctt
ttgcagttgaagccattcgactatgaaggtgcaaggaggcagatcaaattcggggaggga
tcaagggcagaacctaaggaaaagggtgacgaaggccatgctgataggagtagggttgat
ccagtggatagggcaagtagtgcagctacgagcgctggtgactctcagtctcagtctcag
tctcagtctcgtagggatgatgaaggtactagaaacttggcgcagggtagaaggcgccag
gccttcccagcgagtgggaaccgaagtgcgactttccgttga
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