| Entry |
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| Name |
(RefSeq) polyadenylation and cleavage factor homolog 4
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| KO |
| K14400 | pre-mRNA cleavage complex 2 protein Pcf11 |
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| Organism |
dlt Diospyros lotus (date-plum)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:dlt00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127790246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:dlt03021]
127790246
03019 Messenger RNA biogenesis [BR:dlt03019]
127790246
Transcription machinery [BR:dlt03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127790246
Messenger RNA biogenesis [BR:dlt03019]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127790246
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
14:4461023..4471745
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| AA seq |
1108 aa
MEMESSRRPYDRSREPGPKKPRLAEEAAIDRNSNARLFAQKPAPLGSGSMPTRYRSNDRD
RDSESSDSMRGPYQQQHQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIA
GTVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSTHPGM
RHLFGTWKGVFPPQSLQMIEKELGFPPAINGSSSGPATSRPDSQPQRPAHSIHVNPKYLE
ARQRLQQSSRAKGVANDSSGTMANSPEDVERPEKEAFISSGRPWVDPPLKMHDAQRPHRD
VPKESAREKNIGASYGDYELSSDLSHPGFGTERADEQVKEQAFNKPWYGAGSSAAETISG
QRNGFDVKHGFPSYSASRMTNIDVHHQQPKKDIPSRSNSGVNQSWKNSDEEEYMWDDMNS
RSSDHGAISSSRKDYLTPDGSERLGSENHLWKQRSIYDIGSRVEREASTDELSKEQKDQA
IFGHQMSSLWTPEKHSTDGESHSGSDRIISGHSEGFPSSFSGLSTSANSLSRVSFQSQAG
PSSIGPSSFGLSTNPVSGSTGLMGQQHSVGAALPSSLPGHHPHQGLESLIDQDHLRTQFL
PRPELQKSQFSGPSNMRPHNQFSQDSMSLHLGKIRPANSQKQPQNLRTPPVMPSADVKLR
SPFLQHLPPDSIMSEPSDKSHKLLFPQAVVSGNASAHENPSSDPANPPPAETSGQSSNTS
TLLASIVESGILSANSVSGSLPKLSFQNSGKMSSKSFMPPPLPSGPPPAQFTSSGSRVAS
GSRKSLPSHDSKSASTTLLEREVEQPPLPLSCPPSLLVGSASTQASNVTDAVTNPVSSLI
SSLVAKGLISASQKELPTSLSQPMPNQPHKQKASIVSTATVSVSSVPVTSTTTVSSNRDE
LSKPVAGGSVAISQLTSEAVKTLIGIEFKPDVIRQQHPAVITELLDDLPHQCSTCCLRLK
LQDQLQSHMEWHALRNPEVTDLHKASRTWYANSADWVGGKAGIPSGIESTVLETSGKGME
KGMDMVPADESQCACILCGELFEDFYSHERAEWMFKGAVYMTIPMGDAMVGASKDSAAEG
PIVHANCLSERSVEDLALGSSVKLEMDA |
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| NT seq |
3327 nt +upstreamnt +downstreamnt
atggaaatggagagttctcgtagaccatatgatagatcgagagaaccgggaccgaagaag
ccgagattggccgaagaggccgccatcgatagaaattcaaacgcgcggcttttcgcacag
aagcctgctcctttggggtccggttcgatgcccacaagatatcgatccaacgacagagat
agggactcggagagtagcgattcaatgcgagggccttaccagcagcaacatcaacaacac
caagagcttgtcagtcagtacaagaccgcccttgcggagctgactttcaattcgaagccc
atcattactaacttgacgatcatcgccggggagaacttgtacgctgccaaggccattgcg
ggcacagtctgcgctaatattctcgaggttccaagtgagcaaaagcttccttcactttat
cttttagacagcattgtgaagaatattgggagggattacataaaatactttgctgccaga
ttacctgaggtattctgcaaggcatatagacaggttgactcttctacacatcctgggatg
cggcatctttttggaacttggaaaggagtcttccctcctcagtcccttcagatgattgag
aaagaacttggttttcctcctgccatcaatggttcatcctctgggcctgcaacatctagg
cctgattcacagcctcaacgtcctgcacacagcattcatgtaaatccaaagtatttagag
gcaagacaacgtcttcaacagtcaagcagggcaaaaggagtggctaatgacagtagtggg
acaatggcgaactcacctgaggacgtagagagaccagaaaaggaagcttttattagttct
gggaggccatgggtggatcctcctcttaagatgcatgatgctcaacgtcctcatagggat
gtacctaaggagtctgctcgtgagaagaacattggtgcgtcatatggagactatgaattg
agttctgatctttcacatccgggctttggaacagaaagagctgatgagcaggttaaggag
caagcatttaacaagccttggtatggagctggttctagtgcggcagagacaatatctgga
caaaggaacggttttgatgtaaagcatgggtttccaagttattcagcctctagaatgacg
aatattgatgtgcatcatcaacaaccaaaaaaggacattcccagcagaagcaatagtggg
gtgaatcagagctggaagaactctgatgaagaggagtatatgtgggatgatatgaactcc
agatcaagtgatcatggtgcaatcagtagctctaggaaagactatttgacccctgatggt
tctgaaagattgggcagtgagaaccatctctggaaacaacgaagcatatatgatattggg
tcaagagttgaaagagaagcgtcaactgatgaactttccaaggaacagaaagatcaagca
atttttgggcatcagatgtcatcattatggactccagaaaagcattcaacagatggggag
agccattcaggctctgatagaattatttcaggccattcagaaggctttcctagttctttc
agtgggttgtcgacaagtgcaaattctctatccagggtgtctttccagtcacaagcaggg
ccatcaagtattggaccctcaagttttgggttgtcaacaaatccagtgtcaggttccact
ggattgatggggcaacaacattctgtcggagctgctttaccctcatctttgccagggcac
catccccaccaaggattggagagcttgattgatcaagaccatctgcgaactcaattcctt
cctcgtccagaattacaaaaatcacaattttcaggaccgtcaaacatgaggcctcacaat
caattttctcaggactccatgtctctgcatcttggaaaaattcgtccagcaaactcacag
aaacaaccccagaatttacgtactcctcctgtgatgccctctgctgatgtaaagctgcgc
tctccttttctgcaacaccttccaccagactccataatgtctgaaccttctgacaaatcc
cataaattgctatttcctcaggctgtagtttctggaaatgcatcagcccatgagaatcct
tcatcagatcccgcaaatcctcctcctgcagaaacttctgggcaatcatcaaacacaagt
actttgttggcttccatagtggaaagtggaatactcagtgccaattctgttagtggcagc
ctaccaaagttgagttttcagaattctgggaaaatgtcatcaaagtctttcatgccgcct
cctttaccgagtggccctccacctgctcaatttacatcttcaggttcccgagtagcatca
ggatcccgtaaaagtcttccttcccatgacagtaaatcagcctccacaactctccttgaa
agagaggtagagcaaccacccctgccacttagttgtcctccttccttgctcgtgggtagt
gcgtcgacacaagcttcaaatgtgacagatgccgtcaccaatcccgtgtctagtctgatc
agttctttggttgcaaagggattaatttctgcatcacagaaagagctacctacgtctttg
tctcagccaatgcctaatcaaccccataaacagaaagcaagcattgtttcaactgctaca
gtatctgtttcttcagttccagttacctcgaccaccacagtttcatccaatagagatgag
ctttccaaacctgttgctgggggctctgttgccatatctcaattgacctcagaggctgta
aaaactcttattggtattgagtttaaacctgatgtaattcgtcagcaacatccagctgtc
atcactgaactacttgatgaccttcctcatcagtgcagcacttgttgccttcgacttaaa
cttcaagatcaacttcagagtcacatggaatggcatgcattgagaaatcctgaagtgacc
gatctacacaaggcttcaagaacatggtatgcaaactcagctgattgggtaggtggaaag
gctggaattccatcaggaattgaatccactgtgttggaaacatctggcaagggaatggag
aagggcatggatatggttcctgcagatgaaagtcaatgcgcatgcattttgtgtggtgag
ctttttgaagatttttacagtcatgaaagggctgaatggatgttcaaaggagctgtctac
atgactatacccatgggagatgctatggtaggagcctcaaaggatagtgctgccgaggga
cctattgttcatgcaaactgcctatcagaacgttcagttgaggatttggctttggggagc
agtgttaaattggaaatggatgcataa |
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