Diospyros lotus (date-plum): 127790246
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Entry
127790246 CDS
T10632
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127790246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127790246
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127790246
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127790246
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127790246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
127790246
NCBI-ProteinID:
XP_052175552
LinkDB
All DBs
Position
14:4461023..4471745
Genome browser
AA seq
1108 aa
AA seq
DB search
MEMESSRRPYDRSREPGPKKPRLAEEAAIDRNSNARLFAQKPAPLGSGSMPTRYRSNDRD
RDSESSDSMRGPYQQQHQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIA
GTVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSTHPGM
RHLFGTWKGVFPPQSLQMIEKELGFPPAINGSSSGPATSRPDSQPQRPAHSIHVNPKYLE
ARQRLQQSSRAKGVANDSSGTMANSPEDVERPEKEAFISSGRPWVDPPLKMHDAQRPHRD
VPKESAREKNIGASYGDYELSSDLSHPGFGTERADEQVKEQAFNKPWYGAGSSAAETISG
QRNGFDVKHGFPSYSASRMTNIDVHHQQPKKDIPSRSNSGVNQSWKNSDEEEYMWDDMNS
RSSDHGAISSSRKDYLTPDGSERLGSENHLWKQRSIYDIGSRVEREASTDELSKEQKDQA
IFGHQMSSLWTPEKHSTDGESHSGSDRIISGHSEGFPSSFSGLSTSANSLSRVSFQSQAG
PSSIGPSSFGLSTNPVSGSTGLMGQQHSVGAALPSSLPGHHPHQGLESLIDQDHLRTQFL
PRPELQKSQFSGPSNMRPHNQFSQDSMSLHLGKIRPANSQKQPQNLRTPPVMPSADVKLR
SPFLQHLPPDSIMSEPSDKSHKLLFPQAVVSGNASAHENPSSDPANPPPAETSGQSSNTS
TLLASIVESGILSANSVSGSLPKLSFQNSGKMSSKSFMPPPLPSGPPPAQFTSSGSRVAS
GSRKSLPSHDSKSASTTLLEREVEQPPLPLSCPPSLLVGSASTQASNVTDAVTNPVSSLI
SSLVAKGLISASQKELPTSLSQPMPNQPHKQKASIVSTATVSVSSVPVTSTTTVSSNRDE
LSKPVAGGSVAISQLTSEAVKTLIGIEFKPDVIRQQHPAVITELLDDLPHQCSTCCLRLK
LQDQLQSHMEWHALRNPEVTDLHKASRTWYANSADWVGGKAGIPSGIESTVLETSGKGME
KGMDMVPADESQCACILCGELFEDFYSHERAEWMFKGAVYMTIPMGDAMVGASKDSAAEG
PIVHANCLSERSVEDLALGSSVKLEMDA
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagttctcgtagaccatatgatagatcgagagaaccgggaccgaagaag
ccgagattggccgaagaggccgccatcgatagaaattcaaacgcgcggcttttcgcacag
aagcctgctcctttggggtccggttcgatgcccacaagatatcgatccaacgacagagat
agggactcggagagtagcgattcaatgcgagggccttaccagcagcaacatcaacaacac
caagagcttgtcagtcagtacaagaccgcccttgcggagctgactttcaattcgaagccc
atcattactaacttgacgatcatcgccggggagaacttgtacgctgccaaggccattgcg
ggcacagtctgcgctaatattctcgaggttccaagtgagcaaaagcttccttcactttat
cttttagacagcattgtgaagaatattgggagggattacataaaatactttgctgccaga
ttacctgaggtattctgcaaggcatatagacaggttgactcttctacacatcctgggatg
cggcatctttttggaacttggaaaggagtcttccctcctcagtcccttcagatgattgag
aaagaacttggttttcctcctgccatcaatggttcatcctctgggcctgcaacatctagg
cctgattcacagcctcaacgtcctgcacacagcattcatgtaaatccaaagtatttagag
gcaagacaacgtcttcaacagtcaagcagggcaaaaggagtggctaatgacagtagtggg
acaatggcgaactcacctgaggacgtagagagaccagaaaaggaagcttttattagttct
gggaggccatgggtggatcctcctcttaagatgcatgatgctcaacgtcctcatagggat
gtacctaaggagtctgctcgtgagaagaacattggtgcgtcatatggagactatgaattg
agttctgatctttcacatccgggctttggaacagaaagagctgatgagcaggttaaggag
caagcatttaacaagccttggtatggagctggttctagtgcggcagagacaatatctgga
caaaggaacggttttgatgtaaagcatgggtttccaagttattcagcctctagaatgacg
aatattgatgtgcatcatcaacaaccaaaaaaggacattcccagcagaagcaatagtggg
gtgaatcagagctggaagaactctgatgaagaggagtatatgtgggatgatatgaactcc
agatcaagtgatcatggtgcaatcagtagctctaggaaagactatttgacccctgatggt
tctgaaagattgggcagtgagaaccatctctggaaacaacgaagcatatatgatattggg
tcaagagttgaaagagaagcgtcaactgatgaactttccaaggaacagaaagatcaagca
atttttgggcatcagatgtcatcattatggactccagaaaagcattcaacagatggggag
agccattcaggctctgatagaattatttcaggccattcagaaggctttcctagttctttc
agtgggttgtcgacaagtgcaaattctctatccagggtgtctttccagtcacaagcaggg
ccatcaagtattggaccctcaagttttgggttgtcaacaaatccagtgtcaggttccact
ggattgatggggcaacaacattctgtcggagctgctttaccctcatctttgccagggcac
catccccaccaaggattggagagcttgattgatcaagaccatctgcgaactcaattcctt
cctcgtccagaattacaaaaatcacaattttcaggaccgtcaaacatgaggcctcacaat
caattttctcaggactccatgtctctgcatcttggaaaaattcgtccagcaaactcacag
aaacaaccccagaatttacgtactcctcctgtgatgccctctgctgatgtaaagctgcgc
tctccttttctgcaacaccttccaccagactccataatgtctgaaccttctgacaaatcc
cataaattgctatttcctcaggctgtagtttctggaaatgcatcagcccatgagaatcct
tcatcagatcccgcaaatcctcctcctgcagaaacttctgggcaatcatcaaacacaagt
actttgttggcttccatagtggaaagtggaatactcagtgccaattctgttagtggcagc
ctaccaaagttgagttttcagaattctgggaaaatgtcatcaaagtctttcatgccgcct
cctttaccgagtggccctccacctgctcaatttacatcttcaggttcccgagtagcatca
ggatcccgtaaaagtcttccttcccatgacagtaaatcagcctccacaactctccttgaa
agagaggtagagcaaccacccctgccacttagttgtcctccttccttgctcgtgggtagt
gcgtcgacacaagcttcaaatgtgacagatgccgtcaccaatcccgtgtctagtctgatc
agttctttggttgcaaagggattaatttctgcatcacagaaagagctacctacgtctttg
tctcagccaatgcctaatcaaccccataaacagaaagcaagcattgtttcaactgctaca
gtatctgtttcttcagttccagttacctcgaccaccacagtttcatccaatagagatgag
ctttccaaacctgttgctgggggctctgttgccatatctcaattgacctcagaggctgta
aaaactcttattggtattgagtttaaacctgatgtaattcgtcagcaacatccagctgtc
atcactgaactacttgatgaccttcctcatcagtgcagcacttgttgccttcgacttaaa
cttcaagatcaacttcagagtcacatggaatggcatgcattgagaaatcctgaagtgacc
gatctacacaaggcttcaagaacatggtatgcaaactcagctgattgggtaggtggaaag
gctggaattccatcaggaattgaatccactgtgttggaaacatctggcaagggaatggag
aagggcatggatatggttcctgcagatgaaagtcaatgcgcatgcattttgtgtggtgag
ctttttgaagatttttacagtcatgaaagggctgaatggatgttcaaaggagctgtctac
atgactatacccatgggagatgctatggtaggagcctcaaaggatagtgctgccgaggga
cctattgttcatgcaaactgcctatcagaacgttcagttgaggatttggctttggggagc
agtgttaaattggaaatggatgcataa
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integrated database retrieval system
