Diospyros lotus (date-plum): 127790589
Help
Entry
127790589 CDS
T10632
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03013
Nucleocytoplasmic transport
dlt03015
mRNA surveillance pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127790589
09122 Translation
03013 Nucleocytoplasmic transport
127790589
03015 mRNA surveillance pathway
127790589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127790589
03041 Spliceosome [BR:
dlt03041
]
127790589
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127790589
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127790589
Spliceosome [BR:
dlt03041
]
Complex C
Other components
EJC/TREX
127790589
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127790589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
127790589
NCBI-ProteinID:
XP_052176119
LinkDB
All DBs
Position
14:16459483..16479622
Genome browser
AA seq
428 aa
AA seq
DB search
MGEVKDNEAYEEELLDYEEEDDKAPDSANANAAGDSSKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLIECNFPSICIHSGMSQEERLTRYKGFKEGHKRILAATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagtaaaggacaacgaggcttacgaggaagagcttcttgactacgaagaggag
gacgacaaagctcctgattccgccaatgctaacgccgctggagactcctccaagaagggt
tatgttggaattcacagctcaggattcagagatttcttgttgaaaccagaacttcttcga
gcaattgtagattctgggtttgagcatccttcagaagtgcaacatgaatgcatacctcaa
gctatattaggaatggatgtcatctgtcaagcaaagtcagggatgggaaagactgcagta
tttgttctgtctactctgcagcaaattgaacctgtcacaggacaagttgctgctcttgta
ctttgccatacaagggaattggcttaccagatctgccatgaatttgagagattcagtacc
tatttgcctgatattaaggttgctgtcttttatggtggtgtcaatatcaagattcacaag
gatttactcaagaatgaatgccctcatattgttgttggaacacctggaagaatattggct
cttgcaagagataaggatcttggcttgaagaatgtgaggcattttatccttgatgagtgt
gacaagatgctagaatcactcgacatgaggagagatgtgcaggaaatctttaagatgact
cctcatgataagcaagttatgatgttttcagctacactcagcaaggagattcgcccggtt
tgcaagaaatttatgcaagatccaatggaaatttatgtggatgatgaggccaaattgact
cttcatgggcttgtacagcattatattaaactgagtgagcttgagaaaaaccgcaagttg
aatgatctccttgatgcactggacttcaaccaagttgtcatctttgtcaaaagcgtcagc
agagcagctgagctaaacaaattactcattgaatgcaactttccttctatctgcatccat
tctggaatgtctcaagaagaaaggttgacacgttataaaggattcaaggagggacataaa
agaatccttgcggctactgatttagttggaagaggaattgacattgagcgtgtcaacatt
gttatcaactatgacatgcctgattctgccgacacctacctgcaccgtgttggcagagct
ggtaggtttggtaccaaggggctcgctatcacgtttgtttcttctgcttctgactctgat
gtccttaatcaggttcaggaaaggtttgaggtggatattaaagaacttcccgagcaaatt
gatacttctacatacatgccgtcgtga
DBGET
integrated database retrieval system
