Diospyros lotus (date-plum): 127791056
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Entry
127791056 CDS
T10632
Name
(RefSeq) uncharacterized protein LOC127791056 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127791056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127791056
03041 Spliceosome [BR:
dlt03041
]
127791056
03036 Chromosome and associated proteins [BR:
dlt03036
]
127791056
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
127791056
Spliceosome [BR:
dlt03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127791056
Complex B
127791056
Complex C
U2 SnRNP specific factors
127791056
Chromosome and associated proteins [BR:
dlt03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
127791056
TFTC complex
127791056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
127791056
NCBI-ProteinID:
XP_052176752
LinkDB
All DBs
Position
14:12764687..12841183
Genome browser
AA seq
1382 aa
AA seq
DB search
MAVSEEESSSAKSRSASKGVHYLAKGVLRGSVVLQVVQGHIRSPSSNDVVFGKETSIELV
IIDEDGFVQSICEQPVFGTIKDLAVLPWNERFQARSPQILGKDLLVVISDSGKLSFLSFS
NEMHRFFPLTQIQLSAPGNSRHQVGRMLAVDSFGCFIAASAYEDQLAMFSVSISAATDII
DKRISYPSENEGDPSTGSGLTNICGTIWSMCFISRDFCHPNKEQNPMLAILLNRRGSFIN
ELLLLEWSIREHAIHVISEFAEPGPLAHSVVEVPHSYGFALLFRIGDVLLMDLREAHKPC
YAYRMNLNFLPTAVEEQTFIDDSCRVNDVDEESLYDVAASALLELKDILKDDDPMSIDGD
SGNINSHSKHVCSWSWEPGNEKNPRMIFCIDSGELFMIEISSDSDGIKVDLSECLYKGLP
CKTLLWSEGGFLSALVEMGDGMVLKLEDGRLLYRSPIQNIAPILDMSVVDYHDEIHDQMF
ACSGMAPEGSLRIIRSGISVEKLLRTAPIYQGITGTWTVKMKFIDSYHSFLVLSFVEQTR
VLSVGLSFTDVTDIVGFQPDVCTLACGLVSDGLLVQIYQNAIRLCLPTAAAHPEGLPSLL
PICTSWSPDNISISLGAVGHNLIVITTSSPSFLFILGVRHLSAGNYEICEMQHVKLQHEL
SCISIPVKNFEHKPSTCNLAVKNPVHTLPEGVDSGITFVIGTHKPSVEILSFLPDKGLRF
LAVGTISLTNTMGTAVSGCVPQDVRLVSVDRLYVLSGLRNGMLLRFEWPALSMSTSISLS
QRPRSNSCLVNLDTYLVKATEPQNFTFDSSEKSKGNPVYLQLVAIRRIGITPTFLIPLSD
SPDADMIALSDRPWLLQTARHSLSYTSISFQPSTHATPVCSAECPKGILFVAENSLHLVE
MVNTKRLNAQKFHLGGTPRKVLYHSESRLLLVMRTELSHDSYSSDICCIDPLSGSVLSSF
RLEPGETGKSMGLVRAGNEQVLVIGTGLSAGPAIMPSGEAESSTRGRLIVLCLEHMQNSD
SASMTSCSKAGSASQRTSPFREVVGYAAEQLSSSSLCSSPDDNSCDGIRLEETEAWHLRL
AYSTRWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNSQKVRRLAVGRTRFMIMTLTAH
FTRIAVGDCRDGILFYTYHEDARKLEQLYCDPIQRLVADCILMDVDTAVVSDRKGSITVL
SCSNLSEDNASPECNLTRSCSFYMGEIAMSIRKGSFSYKLPADDILKACDVANTVTDLSH
NSIMASTLLGSIIVFIPISREEYELLEAVQARLAVHPLTAPILGNDHNEFRSRESSAGVP
KILDGDMLGQFLELTSMQQEAVLALPLGSPDTIVLSSKHSSSTPVTVNQVVRLLERVHYA
LN
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtcggaggaagagtcatcgtcggccaagtctcgatcggcctccaagggcgtc
cactatctcgccaagggcgtcctcagaggaagcgtcgtccttcaggtcgtccaaggacat
attcgctctccttcctctaacgacgttgttttcggcaaggaaacatccatagaattggtt
ataattgatgaagatggatttgtacaatctatctgtgagcagcctgtgtttggcaccata
aaggatcttgctgtcctaccttggaatgagagattccaagctagaagccctcagatattg
gggaaagaccttcttgttgttatttctgattctgggaagctatcatttctctcattttca
aatgaaatgcacaggttttttccattgacccaaattcaactttctgctcctggcaactca
aggcatcaggtgggaaggatgttagctgttgattcctttggatgcttcattgctgctagt
gcatatgaggatcaattggctatgttctcagtttcaatctctgcagccactgatatcatt
gataagagaatatcttatccttctgaaaatgaaggggacccaagtacaggcagtggtctg
accaatatttgtgggactatatggagcatgtgttttatttccagagatttttgccaccca
aataaggagcagaatcctatgttagccattcttctgaataggaggggatctttcataaat
gagcttttgctattggaatggagtattagggaacatgctattcatgtaatttctgagttt
gctgaacctggaccgctagcacacagtgtggttgaagttccacattcatatggatttgcc
cttctgttcaggattggtgatgttctcttaatggatctaagggaggctcacaaaccgtgt
tacgcatatagaatgaacttaaattttttgcctactgccgtagaggagcagacttttatt
gatgactcttgtagagtaaatgatgttgatgaggaaagtctttatgatgttgctgcgtct
gctttactggagctaaaagacatccttaaagatgatgatcccatgagtattgatggagac
agtggtaatatcaattcacattcaaaacatgtgtgctcatggagctgggaaccaggaaat
gaaaaaaatccaaggatgattttctgtatagatagtggagaactttttatgattgaaatt
tcttcagattctgatggtattaaagttgatctatctgaatgtctctacaaaggtctgcct
tgcaaaacacttttatggtcagaaggtggattcttgtctgctcttgttgagatgggagat
ggaatggtcttgaagttggaagatggaaggctactttacagaagtccaatacaaaatatt
gccccaattttggatatgtcagtagtggattaccatgatgaaatacatgatcagatgttt
gcttgctctgggatggcaccagagggatctttgaggattattcgaagtggcatcagcgta
gaaaagctgttgagaactgcccctatttatcaaggcataacgggtacttggacagtcaaa
atgaaattcatcgattcttatcattccttcctagtgttatcatttgttgaacaaacaagg
gttctatcagttggcttaagctttacagacgtgactgatattgttggtttccagcctgac
gtctgcacattagcatgtggccttgtcagtgatggtttactggtccagatataccaaaat
gcaattagactgtgtttgcctactgctgctgcccatccagaaggtcttccttcattatta
ccaatttgtacatcatggtcccctgataatatcagtatcagtcttggggcagttgggcat
aatttgatagtcattacaacttcaagtccaagttttttgtttattcttggggtcagacat
ctgtcagcaggcaactatgaaatatgtgagatgcaacatgtgaaattgcagcatgagtta
tcgtgtatttctatccctgtgaagaattttgagcacaaaccttccacttgtaatttggca
gttaaaaatcctgtacatacccttcctgagggagttgacagtggtattacctttgttatt
ggtactcataaaccttcagtggaaattttatcttttctgcccgacaaaggtctaaggttt
ctagcggtagggactatttctttaaccaacactatgggaactgctgttagtggctgtgtt
cctcaagatgttaggcttgtctcagttgatcggctttatgttctatcaggattgaggaat
ggaatgctgcttcggtttgagtggcctgccttgtcaatgtccacttcaatatctctcagc
caaaggcctcgtagcaattcctgtttggtaaacttggatacttacttagtaaaagctaca
gagccccaaaattttacttttgattcatctgagaagtccaagggcaatcctgtttatctt
caattagttgcaatacgccggattggaattactcctactttcctaattccactgagtgat
tcacctgatgctgatatgattgctctcagtgataggccatggttactgcaaacagctagg
cacagcctttcatatacttccatctcctttcaaccttcaacacatgcaactcctgtttgt
tctgctgaatgtcctaaaggaattttatttgttgcagaaaacagtcttcatttggtggaa
atggtcaatactaagaggcttaatgcgcaaaagtttcatcttggaggcactcctcggaag
gttttataccacagtgaaagtagattgttgcttgtaatgaggactgagttgagtcatgat
tcatattcatctgatatatgttgtatagatcctctgagtgggtcagttttatcgtctttt
agacttgagcctggggaaacaggaaagtctatggggttggtgagggctggaaatgaacag
gttttggtgatcggaactggtctgtctgctggtccagccataatgcccagtggtgaagct
gaaagcagtactaggggccgtctgattgtcctctgccttgagcatatgcaaaactcagat
agtgcctctatgacatcttgttcgaaggctggttcggcttctcagcgaacttcacctttt
cgtgaagttgtgggatatgcagctgaacagctgtcaagcagtagtctttgcagcagcccg
gatgataatagctgtgatgggatcaggcttgaagaaactgaagcatggcatctaagattg
gcttattcaaccagatggcctggaatggtacttgctatctgcccttaccttgatcgttat
ttcttggcatctgctggtaatgctttctatgtctgtggttttccaaatgataattcacag
aaggtgagaagattggctgtaggaagaacacgttttatgataatgactttgacagctcac
tttactagaattgccgttggtgattgccgtgatggaatccttttctatacctaccatgag
gatgccaggaaactggagcaactttactgtgatcccattcagcgattggtggctgattgc
attcttatggatgttgatactgctgttgtttcagatcgcaaggggagtataactgtcttg
tcatgttcaaatctatcagaagataatgcaagtcctgaatgtaacctgacacgaagttgt
tcattctacatgggtgagattgccatgagcattaggaagggttcattttcatacaagctt
ccagcagatgatatactgaaggcctgtgatgttgctaatacagttactgatttatcgcac
aacagtatcatggccagtacactgttgggaagcataattgttttcattcctatatcaagg
gaagaatatgagcttttagaagctgtgcaggccagactggcagttcatccactgactgct
cctattctaggaaatgatcataatgagttccgcagccgtgaaagttcggctggagtgcct
aagatacttgatggtgatatgctgggtcagttcttggagcttacaagcatgcaacaagag
gctgtgctagcattacctctcggctcaccagacacaattgtgttgagttcaaagcactca
tcatccacacccgttacagttaaccaggtcgtgcgtctccttgaaagagttcattatgcc
ctaaattga
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