Diospyros lotus (date-plum): 127793035
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Entry
127793035 CDS
T10632
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127793035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127793035
03012 Translation factors [BR:
dlt03012
]
127793035
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127793035
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127793035
Translation factors [BR:
dlt03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127793035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
Dicer_dimer
ATPase
AAA_16
T2SSE
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
127793035
NCBI-ProteinID:
XP_052179750
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MPYSSIFLFDYLTTTSLHLRRRFRFCPKHATLILSRRPPRLSSSSASQFSASGVPPHCRL
RSSAAAISSSAAADSSSLCSTLVFKQQRSSCFPYLYHQSSPYGRLAYDDYASEEDSDREV
ESRQLCASTLDNIEEWKWKLTLLMRNQDEQEVVSREKKDRRDFDQISAVATRMGLYSRHF
SKVVVVSKVPLPNYRSDLDDKRPQREVVLPFGLEREVNSHLRAYISSKSANKDNFSDNTF
SSSSTVSSLDTDQGAQEQEVPLIRNSIIAEKILRRRSLQLHNKQQDWQESPEGQKMLEFR
RSLPAYKERDALLKSISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGALCSIICTQP
RRISAMAVAERVAAERGESLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKG
ITHVVVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPMLHIP
GFTYPVRSLFLENILEMTGYSLTQYNQIDNYGQEKMWKMQKQALRKKKSNIASSVEDALE
AADFREYGPRTRESLSCWNPDAIGFNLIEHVLCHIVRRERPGAVLVFMTGWDDINSLKDQ
LQTHPLLGDPNRVLVLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFV
VDCGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADY
QLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAIEYLKIIGALDENENL
TVLGRNLSVLPVEPKLGKMLLLGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKA
QFSARDYSDHLALVRAYEGWKEAERQQSGHEYCWRNFLSAQTLKAIDSLRKQFFYLLKDA
GLVDHNGEACNTWSPDEHLIRAIICAGLFPGICSVVNKEKSVSLKTMEDGQVLLYSNSVN
GQELTIPFPWLVFNEKVKVNTVFLRDSTAISDSVVLLFGGNVSRGGLDGHLKMLGGYLEF
FMKPTLADTYLRLKKELEELIQQKLLNLKLDIRDHNELLLAVRLLVSEDRNEGKFVFGRQ
VPSSSKQTAKETMPGTPLRSSAGSDGGDNSKSQLQTLLARAGHGAPTYKTTQLKNNKFRS
TVIFNGLDFVGQPCSNKKLAEKDAAAQAIQWLMGDTQSSQKAIDNMSILLKKSKKKRKVH
ASSKWR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcctcaatattcctgttcgactacctcacaacgacttcgctacacctccgt
cgccgcttccgtttctgccctaaacacgcgacgctcatcctgagccgccgcccgccgcgg
ttgagcagctcgagcgcctctcagttttccgcctccggcgtccccccgcactgccgcttg
aggtcctctgccgccgccatttcctcctcggcggcggcggactcgtccagtctttgctcc
actttggtttttaagcagcagagaagttcttgtttcccttacttgtatcatcagagttcg
ccgtatggtcggctggcctatgatgattatgcttccgaggaggactctgatagggaggtc
gagtctcgtcaattgtgtgcttcaacccttgataacattgaagagtggaagtggaagtta
accttgcttatgcgcaaccaagatgaacaagaagtggtgtcaagggagaaaaaagatagg
cgtgattttgatcaaatttcagcagttgcgaccagaatgggtttatatagccggcatttt
tcaaaggtagttgttgtcagtaaagtcccactgcctaattacagatctgatctggatgat
aaacgtccacagagggaggttgtcttaccttttgggttggaaagagaagtaaattcacac
cttagagcatatatttctagcaagtctgcaaacaaggacaacttttcagataataccttt
tcaagttccagcaccgtgagcagtcttgatactgatcaaggagctcaagagcaagaggtg
cccttgatacggaacagcattatagcagaaaaaatccttcggcgtagaagtttgcagctg
cacaataagcagcaagattggcaggaatctccagaaggccaaaagatgctcgaatttcgt
aggagtctcccagcatacaaagagagagatgcattattaaagtctatttctcaaaatcag
gtggtggttgtgtctggtgaaactgggtgtggcaagactacccaacttcctcaatatatc
ttggagtctgaaattgaagctgctcgtggagctctctgtagtattatttgtactcagcct
agacgaatatctgccatggctgttgctgaacgagttgctgccgagcgaggggagagtctt
ggagaatctgttggttataaagtacggttagaggggatgaaaggaagggatactcgcctt
cttttttgtaccactggtattttgttaaggagattacttgttgatagaaacttgaaaggg
ataactcatgttgttgtggatgaaattcatgaacgtgggatgaatgaagactttcttctt
attgtcctgaaggatcttcttcctcgccgacctgaattaaggttgattttaatgagtgct
acattgaatgctgagcttttctcctcatacttcggtggtgctcctatgctccatattcct
ggatttacatacccggtacgaagtctttttctggagaacattttagaaatgactggctat
agtttaactcaatataaccagattgataattatggccaagaaaagatgtggaaaatgcag
aagcaagctctcagaaaaaagaagagcaatattgcttcatctgtggaggatgcacttgaa
gctgctgattttagggaatatggtccacgaacacgggagtctttatcctgttggaatcct
gatgcaatcggcttcaatctcattgaacatgtgctatgccatattgttaggagggaaagg
cctggtgctgttttggtgttcatgactggttgggatgacataaactctttgaaagatcaa
ctacagactcatccacttctgggtgatccaaacagagttttggtgcttgcatgccatggc
tccatggctagctcggagcagaggttaatatttgataagcctgaagatggagtgaggaaa
atagtgctggccaccaacatggctgagacaagtatcacaattaatgatgtggtctttgta
gttgactgtgggaaggctaaagagacatcatatgatgctctgaataacactccatgcttg
cttccttcatggatttccaaggcttctgctcggcagagaagaggtagggctggacgtgtt
caaccaggcgagtgttaccatctctatccccgatgtgtctatgatgcttttgctgattat
caacttcccgagcttttaaggacacctttgcagtctctatgcttgcaaatcaaaagctta
caacttgggagtatctcagagttcctatcaagggctttgcagccaccagagcctttatct
gttcaaaatgctattgaatatttgaagatcattggtgctttggatgagaatgaaaatcta
actgtacttggacgcaatttatctgtgcttccagttgagccaaaattggggaaaatgctt
ttattgggagctattttcaactgtctagacccaataatgactgttgtagctggtttgagt
gtcagagatccattcttgatgccatttgacaagaaagatcttgcagaatctgcaaaagcc
cagttttctgcccgtgattacagtgaccatcttgctcttgtccgggcttatgagggttgg
aaagaagctgaaagacaacaatctggtcatgagtattgttggagaaatttcctctctgca
caaacactaaaagccatcgactctctccggaagcaattcttttatttgctcaaggatgct
ggtctagttgatcacaatggagaagcttgcaacacatggagccctgatgagcatctgatt
cgggcaattatctgtgcgggtttgttcccaggcatatgctctgtggtgaacaaagagaaa
tctgtatcattgaaaactatggaggatggtcaggttcttctttactcaaattctgtgaat
ggccaggaactcacaattccattcccgtggctggtattcaatgaaaaggttaaagtgaac
acagtatttctccgggattcaacagctatatctgattctgtggttctcttatttggagga
aacgtgtctagggggggtttggatggtcacttgaaaatgttggggggctacttggaattt
ttcatgaaacctaccttagcagatacatatctaagactgaagaaagagcttgaagaactt
attcaacagaaacttttgaacctcaagttggacatacgagatcataacgagctcctgttg
gcagtaagactgctggtatcagaagatagaaacgagggtaaatttgtatttggtcgccag
gtgccatcatcctcaaagcagacagcaaaagagacaatgccagggacgcccttgagaagt
tctgccggtagtgatggtggtgataattccaagagccagcttcagacgttgcttgccagg
gctgggcatggagcacccacctataagactacacaactgaagaataacaagtttcgctcc
actgtaatatttaacgggttggactttgtaggtcagccttgcagcaataagaaactggca
gaaaaggatgcagcagcgcaggccatacaatggttgatgggtgacacccaatcatctcag
aaagctattgacaatatgtcaatcctcttgaagaagagcaaaaagaaacgtaaagttcat
gcttcttctaagtggaggtag
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integrated database retrieval system
