Diospyros lotus (date-plum): 127793194
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Entry
127793194 CDS
T10632
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127793194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127793194
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127793194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_WDR75_1st
Cytochrom_D1
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_NOL10_N
TPM_phosphatase
Motif
Other DBs
NCBI-GeneID:
127793194
NCBI-ProteinID:
XP_052179950
LinkDB
All DBs
Position
Unknown
AA seq
443 aa
AA seq
DB search
MESGNSTGSSLEQTLQDGRLYRQVNALIVAHLRDNNLNQAASAVASATMTPLNVEAPLNK
LLELVAKGLAVEKDEILRGVPSPALFDSGAAIPTGYGSIPATRTVAVDFSAVHDTKGLSK
SFRKHETRHVSEHKNVARCARFSPDGRFLATGSADTSIKLFEIAKIKQMMLPDARDGPIR
PVIRTFYDHLQPINDLDFHPQNTVLITGAKDHTIKFFDFSKTVAKRAFKVIQDTHNVRSV
CFHPSGEFVLAGTDHPVAHLYDVNTFQCYLSANVQEIGTDVAINQVRYSPTGGMYVTASK
DGAIRIWDGVTATCVRPIIGAHGTTEAISAHFTKDQRYVLSSGKDSTVKLWEVGTGRLVK
QYLGATHTVLRCQAVFNDTEEFVISIDEPSNEIVVWDALTAEKVARWPSNHIGAPRWLEH
SPTEAAFVSCGNDRSVRFWKELI
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcggcaatagtactggcagcagcttggagcagacgttgcaggacgggaggctg
taccgtcaggtgaatgctttaatcgttgctcatctccgcgacaacaatctcaatcaggca
gcaagtgcagttgcctcagctacaatgacgccattgaatgttgaagctcctctgaacaag
cttcttgaactggtcgctaagggtcttgcagttgagaaagatgagattttaagaggggtt
ccttcacctgcattgtttgattcaggtgcagcaatacccacaggatatggttcaatacca
gctactcgcactgttgctgttgatttcagtgctgttcatgatacaaaaggcttatcaaag
agcttccggaagcatgagacacgacatgtttcagagcacaagaatgttgccagatgtgct
agattcagtcctgatggaaggtttcttgcaacagggagtgcagacacatccattaagctc
tttgagatagcaaaaatcaaacaaatgatgctgcctgatgcaagggatggtcctattcga
cctgtcatacgaacattttatgaccatttacagcccataaatgatttggattttcatcct
caaaatactgtgctgataactggagccaaagatcacacaataaagttttttgatttttca
aaaacagtagcaaaaagagctttcaaagttatccaggatactcacaatgtgcgatctgta
tgttttcatccctctggagagtttgttttggcaggcactgatcatcctgttgcacacttg
tatgatgtgaatactttccagtgttacctatcagcaaatgtccaagaaattggcactgat
gtagcgataaatcaggtgagatattctccaactggtggcatgtatgtgacagcttctaaa
gatggtgctattcggatctgggatggagtgacagccacttgtgtacgtccaataattggt
gcccatggtacaacagaggccatcagcgcccattttacaaaggaccaaaggtatgttctc
tcctctgggaaggactctaccgtgaagctgtgggaagttggcactggaagattggtcaaa
caatatcttggagctacacataccgtgttacgatgtcaggctgtgttcaatgatacagaa
gaatttgtaatatccatagatgagcccagcaatgagatcgtcgtctgggatgccttgaca
gcagaaaaagtggcacggtggccgtccaaccacatcggtgcaccccgctggcttgaacac
tccccgacagaagcagcgttcgtttcctgtgggaacgacaggtcagttcggttctggaag
gaacttatttag
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