Diospyros lotus (date-plum): 127793197
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Entry
127793197 CDS
T10632
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127793197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127793197
Spliceosome [BR:
dlt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
127793197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_Aladin
NBCH_WD40
Beta-prop_TEP1_C
ANAPC4_WD40
PRP4
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_Nup120_160
eIF2A
WD40_like
Tricorn_2nd
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
127793197
NCBI-ProteinID:
XP_052179956
LinkDB
All DBs
Position
Unknown
AA seq
573 aa
AA seq
DB search
MEVDEENSVSISAAEPTAQMTDDQTSVSAIEPVPVQPIIPPIIAPSLVPPIAPIPSIPPS
IPRPLAPLPVRPPVLKPPQVQNGDVKVSDSDSDRDDSGPSRTTAGSAAEYEVSEQSRQIR
ERQEKAMQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMLMAKL
DAEGQLERLMKAHEDEEAAASVANEEIEEDIQYPFFTEGSTTLMQARVQIAKYSIAKAAM
RLERARRRRDDPDEDLDAEIDWALKQAGSLVLDCSEIGDDRPLSGCSFSCDGEKLATCSL
SGVTKIWSMPQVTKVSTLKGHTERATDVVFSPVDNYIATASADRTARLWNSEGSLLKTFE
GHLDRLARIAFHPSGKYLATTSFDKTWRLWDIDTGEELLLQEGHSRSVYGVSFHHDGSLV
ATCGLDALARVWDLRTGRSILAFEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKRK
SLYIIPAHSNLISQVKFETQEGYFLVTSSYDMTAKVWSCRDFKPIKTLAGHEAKVTSLDV
VRDGQCVATVSHDRTIKLWSIRNNSKEKTMEID
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggatgaggaaaactctgtttcaatttcagctgcagaacccactgcccaaatg
actgatgatcagacttcagtgtctgcaattgagcctgtcccagttcaacctatcattcca
cctataattgcaccttcactcgtgcctcctattgctccaatacccagtattcctccctcg
attccccgtccattggcacctcttcctgttcgaccacctgttcttaagccacctcaggtg
cagaatggtgatgtcaaggtcagtgattcagattctgatcgtgatgattcaggccccagt
aggactactgcaggttcagctgcagaatatgaagtctcagaacagagtagacagattaga
gagagacaggaaaaggccatgcaagaattactgatgaagcggcgtgctgcagcacttgct
gtccctactaatgacatggctgtacgtgctcgtctccggcggcttggtgaacccataaca
ctatttggagaaagggagatggaaaggcgagaccgtttgcgtatgcttatggcaaagctg
gatgctgaaggccaattggagaggctaatgaaagctcatgaggatgaggaggctgcagct
tctgtcgcaaatgaagaaattgaagaagacattcagtaccctttttttactgaagggtca
acaacacttatgcaggcgcgagtacagattgctaagtattccattgcaaaggcagcaatg
cgtcttgagcgtgcaaggaggagaagggatgacccagatgaagatttggatgcagagata
gattgggccttgaagcaagcagggagcttggtcttagattgcagtgaaataggggatgat
aggccactttcaggatgttccttttcctgtgatggagaaaagcttgccacctgctcctta
agtggagttaccaaaatatggagcatgcctcaagtgaccaaggtttctactttaaaaggt
catacagaacgtgcaaccgatgttgttttttctccggtggacaattacatagcaactgcc
tctgctgaccggactgcaaggttatggaacagtgaagggtcattgctgaagacatttgaa
ggacatttggatcgccttgctcggattgccttccatccatcagggaagtacttggcaacc
actagctttgacaagacttggagattatgggatatagatactggcgaggagttgcttctt
caagaaggtcatagcaggagtgtatatggtgtatcttttcaccatgatggatctttagtt
gcaacttgtggtctggatgcgcttgctcgtgtatgggaccttcggacaggcagaagcatt
cttgcattcgaaggccatgttaaacctgttctaggtgtcagtttttctcccaatggttat
catttggccacgggtggtgaagacaacacttgccgtatttgggacttgaggaaaagaaaa
tcattgtatataataccagcgcactcaaatcttatctctcaagtcaaatttgagactcaa
gagggttactttttggtaacttcttcgtatgatatgactgctaaggtttggtcatgtaga
gattttaaacctatcaagacactagctgggcatgaagcaaaagtgacatcattggatgtg
gtaagagatggacagtgtgttgcaactgtttcacatgatcggacgatcaaactctggtca
atcagaaacaacagtaaggagaaaacgatggaaattgactag
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