Diospyros lotus (date-plum): 127793539
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Entry
127793539 CDS
T10632
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127793539
09123 Folding, sorting and degradation
03018 RNA degradation
127793539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127793539
03041 Spliceosome [BR:
dlt03041
]
127793539
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127793539
mRNA degradation factors
5'-3' decay
Lsm complex
127793539
Spliceosome [BR:
dlt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127793539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
127793539
NCBI-ProteinID:
XP_052180245
LinkDB
All DBs
Position
1:43263162..43268572
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AA seq
169 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGERFWRMPECY
IRGNTIKYLRVPDETFGGHFHLPCNIVFVLQVIDKVQEESKSRSDRKPPAVGRGRGRGRE
DAAGGRQTRGVAHGIDDAGARGMGGGRGKGGSGSKSTGSRGGGGGRGRG
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctttctcttctcaagacagcacaggggcatcctatgttggtggaacttaaa
aatggggaaacatacaatgggcatttggtgaattgtgatacttggatgaatatccatctt
cgtgaagtcatatgcacctcaaaggatggagagaggttttggagaatgcctgaatgttac
attcgagggaatacaattaagtatctgcgagttcccgatgagacctttgggggtcatttc
catcttccatgtaatattgtctttgttttgcaggtaattgataaagtacaggaggaaagt
aaaagtcgttcggataggaaaccacctgcagtaggacgtggaaggggaagaggtagagag
gatgctgctggagggagacaaacaagaggtgttgcgcatggcatagacgacgcaggtgcc
agaggaatgggtggaggccgcggcaagggagggtccggcagcaagtctactggtagtaga
ggtggtggtggtggtcgtggccgtggctga
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