Diospyros lotus (date-plum): 127794248
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Entry
127794248 CDS
T10632
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127794248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127794248
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127794248
mRNA degradation factors
5'-3' decay
Decapping complex
127794248
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MSC6_N
Motif
Other DBs
NCBI-GeneID:
127794248
NCBI-ProteinID:
XP_052181153
LinkDB
All DBs
Position
2
Genome browser
AA seq
843 aa
AA seq
DB search
MLPSPENALFDASQYAFFGQEDVEEVELGGLDEEEDGIPVVGYGDDEYHLFDKEEGSGIG
SLSDIDDLTTTFSKLNKVVTGPRHPGVIGDRGSGSISRESSSVTEWQQEADFPDWLDQHM
FDTENCQEGKRWSSQPHSSSLHLMEAKPLGRTSSYPQEQPQQHFSSEPPLYRASSYPQQQ
QEQHFSSEPPLYRTSSYPQQQQKQPHFSSEPIFVPKSSFTSFPPPGGRSQQASPRNHSQH
LNISSITGGHQMPFSAPNSPLSSSNLHLAGLHHGVHYGGNMGQVNPPGLSISSLTQNHWA
SHAGLFHGDQSNLLNNRFRQQFPHQKGLLSTQLIPTQQQLQQQRMHLPVQPSLAHFSALQ
SQVFNALPSIPSHLGKYGWADMRDQRLKSSQRVRQNMRSIPQGSDSNDQKTDNCYPQFRS
KYMTAEEIESILRMQHAATHGNDPYVYDYYHQARLAKKAAELGSKRRFCPVHPKEVTSRS
RNSAESHPHLHVDALGRLSFSSIRRPSPLLEVDPPSSALGNGNSEQVSEKPLEQEPMLAA
RIMIEDGLCLLLDVDDIDRLLQFSQPQDGGTQLRRRRQVLLEGLAASLQLVDPLGKSGNP
VGLDFKDDIVFLRLVSLPKGRKLLSRYLQLLFPGSDLARIVCMAIFRHLRFLFGGLPSDV
GAAETITDLAKTVSTCINGMDLNALSACLAAVVCSSEQPPLRPLGSPAGDGASVILKSVL
ERATQLLTGPHGASNCSTPNPALWQASFDAFFTLLTKYCVSKYDSIVQSIYAQSQPTTEI
FSSEAARAISREMPVELLRASLPHTDELQRKLLLDFAHQSMPVTGINAHEGSSGRVTPES
VKS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcttccctctccagaaaatgcactctttgatgcatcacagtatgccttcttcggtcaa
gaagatgtggaggaagttgagttggggggattagatgaagaagaagatggcattcctgtt
gttggatatggtgatgatgagtaccatctctttgataaggaagagggttcgggcattgga
tcattgtctgatatagatgatctgacaactacattttcaaagttaaacaaagttgttact
ggaccaaggcatcctggggtaattggtgatagaggatctgggtcaatttcaagggaaagt
tcatcagtcactgaatggcaacaggaggcagatttccctgactggttagatcaacatatg
tttgacacagaaaattgtcaggagggtaagagatggtcatcacagccacattcatcttca
ctccatcttatggaagcaaaacccttgggccgaacatcatcatatccccaggagcaaccg
cagcagcacttttccagcgagccacccttgtacagagcatcatcatatcctcagcagcaa
caggagcaacacttttccagtgaacctcccttgtacagaacatcttcataccctcagcag
caacaaaagcaacctcacttttccagtgaacctatttttgtacccaaatcatctttcaca
tcattccctccgcctggtggcagatctcaacaagcttcaccccgcaaccattcgcagcac
ctaaatatttcatctatcactggtggtcatcagatgcccttttctgccccaaactctcct
ttgtctagctctaatctacacttagctggcttgcatcatggggtgcattatggtggaaat
atgggtcaggtaaaccctcctggtctttctattagtagcctaacacaaaaccactgggcc
agccacgctggtttgtttcatggtgatcagtccaacctcttaaacaatagattccgacaa
cagttccctcaccagaaaggactattgtcaacacagttaataccaacccaacagcagctc
caacagcaaaggatgcatcttccagttcagccatctctagctcatttctcagcattgcaa
tcacaagtgtttaatgcccttccttctattccctctcatttgggtaaatatggatgggca
gatatgagagatcaaagacttaaatcttcacaaagggttagacagaatatgcgatctatt
ccacaaggctctgattctaatgaccagaagactgataactgttacccacagtttaggtca
aaatatatgacagctgaagagatagagagtattctcagaatgcagcatgcagccacacat
ggcaacgatccatacgtatatgattactatcaccaagctcgtcttgcaaaaaaggctgct
gaattgggttccaagcgccgtttctgccctgtccacccaaaggaggttacttctcgatcc
cgtaacagtgcagaatcgcatcctcatctccatgttgatgcgcttgggaggctctctttc
tcctccatacgcaggcctagtcctctacttgaagttgaccctccttcctctgctcttggc
aatggcaattctgagcaggtttctgagaagccactggaacaggaaccgatgctggcagca
cgaatcatgatcgaagatggcctttgtcttcttctcgatgtagatgacattgaccggctt
ctacaatttagtcagccacaagatggtgggactcagcttagaaggagacggcaagtcctc
ctggaaggcttggcagcctcacttcagcttgttgacccacttggaaaaagtgggaaccca
gttgggctggacttcaaggatgatattgtgtttttacggttagtttcacttcccaagggt
cgaaagctcctttctaggtacctccagcttctcttcccaggcagtgaccttgctcgaata
gtttgcatggctatctttcgtcatttgaggtttttgtttggtggtctgccctccgacgtg
ggagcagctgagacaattactgatctcgcgaagacagtttccacttgcattaatggcatg
gatcttaatgcccttagtgcatgtcttgctgcagtagtgtgttcgtcagagcagccaccg
ctccgcccccttggtagccctgctggagatggggcctcggttattctaaaatctgttctg
gagagggcaactcaactcttaactggtcctcatggtgctagcaattgtagcacacctaat
cctgccctgtggcaggcctctttcgatgcttttttcactcttctgaccaagtactgtgtt
agtaaatatgatagcatagtgcagtccatatacgcacagtcccagccaaccactgagatt
tttagttctgaggctgcaagagccataagcagagaaatgccggtcgaacttctccgtgcc
agtcttccacacactgatgaactccagcggaaactgttgctagattttgctcatcaatcc
atgcccgttactggaatcaatgctcatgaagggagcagcggtcgagtaactccagaatca
gtgaagagctag
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