Diospyros lotus (date-plum): 127794392
Help
Entry
127794392 CDS
T10632
Name
(RefSeq) uncharacterized protein LOC127794392
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127794392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127794392
03041 Spliceosome [BR:
dlt03041
]
127794392
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127794392
Spliceosome [BR:
dlt03041
]
Complex B
Other components
Prp19-related factors
127794392
Complex C
127794392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
ARM_TT21_C
Sporozoite_P67
Motif
Other DBs
NCBI-GeneID:
127794392
NCBI-ProteinID:
XP_052181389
LinkDB
All DBs
Position
2:complement(22912161..22961032)
Genome browser
AA seq
915 aa
AA seq
DB search
MSIPQELYPSQDDLLYEEELLRNPFSLKLWWRYLVARTEAPFKKRAIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYQTLNNTFERALVTMHKMPRVWIMYLLTLTEQKLVTR
TRRSFDRALCALPVTQHDRIWEPYLVFVSQKGVPIETSLRVYRRYLKYDPTHIEDFLEFL
VNSNLWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLVEKARDIFEEGMTTVITVRDFSVIFDAYSQFEESML
AIKMEEESEGEDDNSEENAEEDDEEEDDRLDVAKLEKKLKRFWLSDDKDVDLRLARLEHL
MDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVGKPHTL
WVAFAKLYETHKDIANARVIYDKAVQVNYKAVDHLASVWCEWAEMELRHKNFKGALELMR
RATAEPSVEVKRRVAADGNEPVQIKLHKSLRLWAFYVDLEESLGTLESTCAVYERILDLR
IATPQIIINYAMLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKLE
RARELFEHAVEVAPAEAVKPLYLQYSKLEEDYGLAKRAMKVYDQATKAVPTHEKLSMYEI
YIARAAEIFGVPKTREIYEQAIESGLPEKDVKSMCVKYAELEKSLGEIDRARAIYVYASQ
FADPRSDPDIWNKWHEFEVQHGNEDTFREMLRIKRSVTASYSQTHYILPEYLMQKDKPNL
DETMDALKKAGVPEDEMVALEKQLVPAANDAATKDGVRKLGFVSAGMESKTDGVVRVTAN
HEDIELPEESDSEDEEKVEIAQKDVPSAVFGGLVRKREEADEEDGTGDDTAAAKDKGGDV
HLGALERIKRLRRAG
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataccacaagaactttatccaagtcaagacgacttgttatacgaagaagaactc
cttcgcaatccattcagcttgaaactatggtggcgatacttggtcgctcgaaccgaagcg
ccgttcaagaagcgagctataatctacgagcgagccctcaaagccctaccgggaagctac
aaattatggtacgcttatctccgtgaacgtctcgaacttgtacggaacctccccatcaca
cactcacagtaccaaaccctaaataacacatttgagagagcacttgtcacaatgcacaaa
atgccacgggtttggattatgtacttgctgaccttgacggagcaaaagctggtcactcgg
actcgccgctccttcgatcgggcgctctgcgcgttgccggtgacgcagcatgatcggatt
tgggagccctatttggtgtttgtcagccaaaagggcgtcccaatcgagacttcacttagg
gtttataggcggtatttgaagtatgatcctactcatatagaggattttcttgagtttttg
gtaaattcgaacctttggcaagaggcagccgagagattagcaggggtcctgaatgatgac
cagttttattcaataaaggggaagaccaagcataggttgtggctcgagttgtgtgatttg
ctcacgcagcatgcgaaggaagtttcagggttgaatgtggatgcgataatcaggggaggg
attaggaagttcacagatgaggttggccggctttggacttcgcttgcagattattatatc
aggagaaacttagtggagaaggcaagggatatatttgaggaggggatgactacagttata
acagttcgggatttcagtgtgatttttgatgcatattcccagtttgaagagagtatgctt
gctataaagatggaagaagaaagtgagggagaggatgataacagtgaagaaaatgctgag
gaggatgacgaagaagaagatgaccgtttggacgtagccaagcttgagaagaagctcaaa
agattttggttgagtgatgataaagatgtagatttgaggttggcacggttggaacattta
atggataggagaccagaactggctaatagtgtgcttcttcgtcaaaacccacataatgta
gaacagtggcatcgacgagtaaagctttttgaaggtaatccgacgaggcagattcttact
tacactgaggcagtgaggactgttgatcccatgaaagctgtggggaagcctcatacattg
tgggttgcttttgcaaagttgtacgagacccacaaggatattgccaatgcaagagtgata
tatgataaggcagtacaggtaaactacaaagctgttgatcatttggctagtgtttggtgt
gaatgggctgaaatggagcttagacacaagaactttaagggggctctggaactgatgaga
cgggctacagcagaaccatcagtggaggtcaaacgaagagtggctgctgatggcaatgaa
ccagtgcagatcaagctgcataaatccttgaggctttgggcattctatgttgatttagag
gaaagcctggggacattagagtcaacttgtgcagtttatgaaaggattttggatctaaga
atagccacaccacaaatcataattaactatgctatgcttttggaggaacacaaatatttt
gaggatgcattcaaggtgtatgaaagaggtgtcaagatttttaaatatccacatgtaaag
gacatatgggtcacatatctttccaagtttgttaaaagatacgggaaatcaaaattggaa
cgtgcaagagagttgtttgagcatgctgttgaagtggccccggctgaagctgtaaagcca
ttgtacctacaatattccaaactagaggaggattatggtctagcaaagcgggcaatgaag
gtttatgatcaagctacgaaggcagtcccaacccatgaaaagttgagcatgtacgagatc
tacatagctcgtgctgcggagatatttggggttccaaaaacaagggaaatatatgagcaa
gctatagaatctggtcttccagagaaagatgtgaaatccatgtgcgtgaaatatgctgag
cttgagaagagcctgggagaaatcgatcgggcccgtgcaatatatgtgtatgcatctcag
tttgcagatccacgatcagaccctgatatctggaacaaatggcacgagtttgaggttcag
catggaaatgaagacaccttcagagaaatgctacgcattaaacggagtgttactgcaagc
tatagccagactcattatatccttccagaatacttgatgcaaaaggacaagccaaatctg
gacgaaacaatggacgcgttgaaaaaagccggggttccagaagacgaaatggttgcttta
gagaagcagttagtgcccgcagccaatgacgctgccaccaaagatggtgtccggaaattg
ggatttgtcagcgctgggatggagtctaagacagatggtgtagtaagagtcaccgcaaat
catgaggatattgagctcccggaggagagtgactcagaagacgaggaaaaagttgagatt
gcccagaaagacgtcccctctgcggtgtttggtggtctggttaggaagcgggaggaggcc
gatgaagaagatggtactggagatgacactgctgctgcgaaagataaaggaggggatgtt
catctgggtgccctggagagaataaaaaggttaagacgggccggatag
DBGET
integrated database retrieval system
