Diospyros lotus (date-plum): 127794504
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Entry
127794504 CDS
T10632
Name
(RefSeq) uncharacterized protein LOC127794504
KO
K07573
exosome complex component CSL4
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127794504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127794504
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127794504
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
127794504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
DUF3082
ECR1_N_2
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
127794504
NCBI-ProteinID:
XP_052181622
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Position
1:53677776..53691055
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AA seq
515 aa
AA seq
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MQAREEETELVTPGEVLGKTSELKAGRGAYVASHNNTVYASITGRRSLIPPPPDSADQRP
MVEVTGHKAHGAVPEPGSIVIAQVTKVMARMASADIMCVGPKSVREKFTGTIRQQDVRAT
EIDKVDMHSSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESMAGATMIPISWTEM
QCQLTGQVEPRKVAKVGKLKMVSFLLHQPHPPALALSSSSSPTLLFRPNTHIVPSPTRSY
NKHPPYKSLTTAPRFALTESEGSPPSLDETDPEFQGQPQTLLQDLADSFVLPADYFAQLP
RDLRLELNDAAFDLSNGPVIDECGQELGETLLNISRAWELAETSTSATLMSKLPFLVGSL
SDNVKSAFGKRLVSAGRRFQAMGQYGQGELQRIAKAMITSGKLLSASRVSAASSNEPKQE
VRMLKFGELQVELTPIKAYIGAAIGLVFGFLSWEVSQGIQSIPESSLEYANDNALLLAKS
LRGALLALFYSSTILSAFATVGLVLLAGRLQPKEK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgagggaagaagagacggagctggtgacgccaggtgaagtgttggggaagacg
tcggagctgaaggccgggaggggagcctacgttgcatctcataataacaccgtctacgcc
tccatcactggacgccgttctctcattccgccgccgccggattccgccgaccagcgacct
atggtagaagttacaggtcacaaggctcatggagctgttcccgagcccggttctattgtc
attgctcaagttactaaggtgatggctagaatggcttcagctgatattatgtgtgtcggg
cctaaatccgtgcgagaaaagttcactggcactattaggcaacaagatgttcgagcaact
gagattgacaaagtagatatgcactcatccttccgtcctggtgatattgtcagagcttta
gttctatcccttggtgatgctcgtgcatattatctatcaactgcgaaaaatgaattgggt
gtcgtatctgcagaaagcatggcaggtgcaactatgatcccaatcagttggacagagatg
cagtgtcaattaacaggccaagttgagccgaggaaggttgccaaggttggaaaactgaaa
atggtttctttccttctccatcaacctcatcctcctgctctggctctctcttccagttcg
agccctacccttctcttccggccaaacacccacatcgtcccttccccaactcgctcctat
aacaaacacccgccctacaagtctctcaccaccgcccctcgttttgctctcactgaatca
gagggctctcccccatcgctcgacgaaacagacccagaatttcaaggccaaccccagacc
ctccttcaagatcttgctgacagttttgttcttccagcggattacttcgcgcagctacct
cgggaccttcgattggagctgaatgatgcggcttttgatctttccaatggtccggtgatt
gatgagtgtggacaagaactaggagagacattgttaaatatctctcgagcatgggagcta
gctgaaacatcaacttccgccactctaatgagcaaactaccttttttagtgggctccctg
tcagacaatgtgaaatcagcatttggaaagcggttggtatctgcaggaaggaggttccaa
gctatgggacaatatggtcaaggtgaactacaaaggattgcaaaagccatgattacatct
ggaaagcttttgtctgcaagtcgggtatctgcagcaagcagcaatgagccaaaacaggaa
gttcggatgctgaagtttggcgagcttcaggttgaactaacaccaataaaggcttacata
ggtgctgcgataggcttagttttcgggtttctttcgtgggaagtaagtcaaggcatccag
agtataccggagagttcactggagtacgccaatgacaatgctttgctgcttgccaagtct
ttacgaggagcgcttctggcactgttctactcgtcgacgatcttgtcagcttttgctact
gtgggacttgtcttgttggcaggacgactgcagccaaaggagaagtga
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